Detailed information NTG0799305

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RDV50_RS05620
• Genome accession: NZ_CP133462
• Coordinates: 1164945..1166174 (-)
• Length: 409 a.a.
• NCBI ID: WP_003682885.1
• Uniprot ID: -
• Organism: Neisseria subflava strain LMG 5313
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1159945..1171174

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV50_RS05610 (RDV50_05610)	-	1161300..1162478 (+)	1179	WP_004519232.1	phosphoglycerate kinase	-
RDV50_RS05615 (RDV50_05615)	yccS	1162644..1164779 (-)	2136	WP_137041356.1	YccS family putative transporter	-
RDV50_RS05620 (RDV50_05620)	pilU	1164945..1166174 (-)	1230	WP_003682885.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RDV50_RS05625 (RDV50_05625)	pilT	1166261..1167307 (-)	1047	WP_003682881.1	type IV pilus twitching motility protein PilT	Machinery gene
RDV50_RS05630 (RDV50_05630)	-	1167425..1168120 (+)	696	WP_137041355.1	YggS family pyridoxal phosphate-dependent enzyme	-
RDV50_RS05635 (RDV50_05635)	proC	1168197..1168994 (+)	798	WP_137041354.1	pyrroline-5-carboxylate reductase	-
RDV50_RS05640 (RDV50_05640)	-	1168997..1169554 (+)	558	WP_137041353.1	YggT family protein	-
RDV50_RS05645 (RDV50_05645)	dksA	1169788..1170204 (+)	417	WP_070631586.1	RNA polymerase-binding protein DksA	-
RDV50_RS10565	-	1170440..1170841 (-)	402	Protein_1104	transposase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45934.44 Da
• Isoelectric Point: 6.0112

>NTDB_id=799305 RDV50_RS05620 WP_003682885.1 1164945..1166174(-) (pilU) [Neisseria subflava strain LMG 5313]
MSDLAPLHDLLSEMVQAYSQKNQAPHIPTPAEIGTHLHPLLDRMCEEAEKRNASDIFISADFPPAIKVGGTLTPMPHKAL
TGADTAAIAESTMNPDQLEAFNRDWEINYSVQSRSNTRYRVNAYHEQGRVGMVLRRVSQDIPEMKTLGLPEKLQELALAP
RGLLILAGPNGSGKSTTMASMLNYRNQKLPGHIVTIEDPIEFIYKPCRSIFTQREIGIDTDNWKIAVQSAMRQAPDVVCI
GEVRSEESMKYALQLAQTGHLCVFTIHANTASQTIERIINFYPEDRRQQVLIDLALNLVGIIGQRLTIKKNRQRTAVTDL
LLNTPAMQDLIFQGELLEIRDLMARSGSNGMQTFDQNLFNLYAQGQIELSEALRQAVSANDLRLRIQMHDEGNNTERLYD
RISDLNLMT

Nucleotide

• Length: 1230 bp

>NTDB_id=799305 RDV50_RS05620 WP_003682885.1 1164945..1166174(-) (pilU) [Neisseria subflava strain LMG 5313]
ATGAGCGACCTCGCCCCTCTGCACGACCTGTTAAGCGAAATGGTGCAAGCCTACTCACAAAAAAACCAAGCACCGCACAT
CCCCACCCCGGCCGAAATCGGCACGCATCTTCACCCCCTGCTCGACCGCATGTGTGAAGAGGCCGAAAAACGCAACGCAT
CCGACATCTTCATCAGCGCAGACTTTCCCCCTGCCATCAAAGTCGGCGGCACCCTCACGCCCATGCCCCACAAAGCACTG
ACCGGTGCGGACACCGCCGCCATCGCCGAATCCACCATGAACCCCGACCAGCTCGAAGCCTTCAATCGCGACTGGGAAAT
CAACTATTCCGTCCAATCGCGCAGCAACACGCGCTACCGCGTCAACGCCTACCACGAGCAAGGCCGCGTCGGCATGGTAT
TGCGCCGCGTCAGCCAAGACATTCCCGAAATGAAGACCCTCGGTTTACCCGAAAAGCTCCAAGAGCTTGCACTCGCACCG
CGCGGCCTGCTGATCCTCGCCGGCCCGAACGGTTCGGGTAAATCCACCACCATGGCCTCCATGCTCAACTACCGCAACCA
AAAGCTGCCCGGCCATATCGTTACCATCGAAGACCCCATCGAGTTTATCTACAAACCTTGCCGCAGCATCTTCACCCAGC
GCGAAATCGGCATCGATACCGACAACTGGAAAATCGCCGTTCAAAGCGCCATGCGTCAAGCGCCCGATGTCGTCTGTATC
GGCGAAGTCCGCAGCGAAGAAAGCATGAAATACGCCCTCCAACTGGCTCAAACCGGCCATCTGTGCGTTTTCACCATCCA
TGCCAACACGGCTTCCCAAACCATCGAGCGCATCATCAACTTCTATCCGGAAGACCGCCGCCAACAGGTTTTGATAGATT
TGGCGTTAAACCTCGTCGGCATTATCGGCCAACGCCTCACCATCAAGAAAAACCGCCAACGTACGGCCGTTACCGACCTC
CTGCTCAACACTCCGGCCATGCAGGACTTGATTTTCCAAGGCGAATTGCTGGAAATCCGCGACTTGATGGCACGCTCCGG
CAGCAACGGCATGCAGACGTTCGACCAAAACCTCTTCAACCTCTACGCACAAGGCCAAATCGAACTCAGCGAAGCCCTGC
GCCAAGCGGTATCCGCCAACGATTTACGCCTGCGCATTCAAATGCACGACGAGGGCAACAATACCGAACGCCTCTACGAC
CGCATCAGCGACCTCAACCTGATGACCTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (79-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	46.927	87.531	0.411
pilU	Pseudomonas stutzeri DSM 10701	46.647	83.863	0.391
pilU	Vibrio cholerae strain A1552	46.588	82.396	0.384