Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   PTW35_RS12050 Genome accession   NZ_CP119423
Coordinates   2626933..2627520 (-) Length   195 a.a.
NCBI ID   WP_281025190.1    Uniprot ID   -
Organism   Photobacterium sp. DA100     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621933..2632520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTW35_RS12030 (PTW35_12030) - 2623390..2623896 (+) 507 WP_281025186.1 response regulator -
  PTW35_RS12035 (PTW35_12035) - 2624029..2625018 (+) 990 WP_281025187.1 2-hydroxyacid dehydrogenase -
  PTW35_RS12040 (PTW35_12040) - 2625263..2625811 (+) 549 WP_281025188.1 hypothetical protein -
  PTW35_RS12045 (PTW35_12045) dsdC 2625884..2626789 (-) 906 WP_281025189.1 DNA-binding transcriptional regulator DsdC -
  PTW35_RS12050 (PTW35_12050) tfoX 2626933..2627520 (-) 588 WP_281025190.1 TfoX/Sxy family DNA transformation protein Regulator
  PTW35_RS12055 (PTW35_12055) - 2627815..2628396 (+) 582 WP_281025191.1 LON peptidase substrate-binding domain-containing protein -
  PTW35_RS12060 (PTW35_12060) - 2628495..2629418 (+) 924 WP_281025192.1 HDOD domain-containing protein -
  PTW35_RS12065 (PTW35_12065) - 2629600..2630499 (+) 900 WP_281025193.1 lysine exporter LysO family protein -
  PTW35_RS12070 (PTW35_12070) - 2630707..2631165 (-) 459 WP_281025194.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22282.78 Da        Isoelectric Point: 9.7596

>NTDB_id=799196 PTW35_RS12050 WP_281025190.1 2626933..2627520(-) (tfoX) [Photobacterium sp. DA100]
MLGFRDEIFNYLREFGGFEKRSMFGGTGIFIDSAMYAIITDEALFLRGGGELDQQLTSLGCEKFRHIKRSTTAVVNYYDV
SRVYQQDLALCSRLVKQSISISTSEKNYKMSGKSKRIRDLPNMRLTLERMVKKAGVPDVTSFVSLGAVEVFRKVRQSQGK
DLDVKLLWMFAGAIDGCHWTLLKDDQKQRLLRDVE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=799196 PTW35_RS12050 WP_281025190.1 2626933..2627520(-) (tfoX) [Photobacterium sp. DA100]
GTGCTAGGTTTCAGGGATGAGATATTTAATTATTTGCGCGAATTTGGTGGGTTTGAAAAACGCTCCATGTTCGGTGGTAC
TGGTATTTTTATAGACAGTGCCATGTATGCCATCATTACCGATGAAGCGTTATTCCTTCGAGGTGGTGGCGAGCTCGACC
AACAATTGACTTCGTTGGGCTGTGAAAAGTTTAGGCATATCAAGCGCAGCACGACTGCTGTTGTGAATTATTACGATGTT
TCTAGGGTCTACCAGCAGGATCTGGCGCTTTGCTCAAGGCTGGTTAAGCAGTCCATTTCTATTTCGACCTCTGAGAAAAA
CTATAAGATGTCAGGAAAAAGCAAAAGGATCAGGGATCTGCCTAATATGCGCTTAACGCTGGAGCGAATGGTCAAAAAAG
CGGGCGTACCGGATGTCACCAGTTTTGTTTCTCTTGGTGCTGTGGAAGTTTTTCGCAAAGTTCGCCAGAGCCAAGGCAAA
GATCTGGACGTGAAGTTGCTATGGATGTTTGCCGGGGCGATCGATGGCTGTCATTGGACATTGCTTAAAGATGATCAGAA
ACAGCGCTTATTACGTGATGTGGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

52.91

96.923

0.513
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

52.91

96.923

0.513
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

52.91

96.923

0.513
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

52.91

96.923

0.513
  tfoX Vibrio cholerae strain A1552

52.91

96.923

0.513
  tfoX Vibrio campbellii strain DS40M4

52.66

96.41

0.508
  tfoX Aliivibrio fischeri ES114

51.031

99.487

0.508
  tfoX Vibrio parahaemolyticus RIMD 2210633

53.804

94.359

0.508