Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PTW35_RS01545 Genome accession   NZ_CP119423
Coordinates   305073..305624 (+) Length   183 a.a.
NCBI ID   WP_281026281.1    Uniprot ID   -
Organism   Photobacterium sp. DA100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 300073..310624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTW35_RS01535 (PTW35_01535) - 300127..301872 (-) 1746 WP_281026279.1 Wzy polymerase domain-containing protein -
  PTW35_RS01540 (PTW35_01540) uvrA 301977..304805 (-) 2829 WP_281026280.1 excinuclease ABC subunit UvrA -
  PTW35_RS01545 (PTW35_01545) ssb 305073..305624 (+) 552 WP_281026281.1 single-stranded DNA-binding protein Machinery gene
  PTW35_RS01550 (PTW35_01550) - 305696..306583 (-) 888 WP_281026282.1 LysR family transcriptional regulator -
  PTW35_RS01555 (PTW35_01555) csrD 306835..308805 (+) 1971 WP_281026283.1 RNase E specificity factor CsrD -
  PTW35_RS01560 (PTW35_01560) - 308933..310426 (+) 1494 WP_281026284.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20000.15 Da        Isoelectric Point: 4.9269

>NTDB_id=799179 PTW35_RS01545 WP_281026281.1 305073..305624(+) (ssb) [Photobacterium sp. DA100]
MASRGVNKVILVGNLGNDPEIRYMPSGGAVANITIATSESWRDKNTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRFTTEVVVQGFNGVMQMLGGRQGGGQGMGAPMGGGQQQGGWGQPQQPAAAPQQNFAPQQQQQAP
QQQAAPQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=799179 PTW35_RS01545 WP_281026281.1 305073..305624(+) (ssb) [Photobacterium sp. DA100]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTCGTGGGTAACTTGGGTAATGATCCGGAAATCCGTTACATGCCAAGTGG
TGGTGCAGTAGCAAATATTACCATTGCCACCTCTGAAAGCTGGCGTGACAAGAACACTGGCGAGCAGCGCGAGAAGACGG
AATGGCACCGTGTGGCGCTATTCGGCAAGCTAGCTGAAGTAGCTGGTGAGTACCTGCGTAAGGGCTCTCAGGTATACATC
GAAGGCCAACTGCAGACGCGTAAGTGGCAAGACCAAAACGGTCAGGACCGCTTCACGACAGAAGTTGTGGTTCAGGGCTT
CAACGGTGTAATGCAGATGCTTGGCGGCCGTCAGGGCGGTGGCCAGGGTATGGGCGCACCAATGGGTGGCGGCCAGCAGC
AGGGTGGTTGGGGCCAGCCTCAGCAGCCAGCAGCGGCGCCTCAGCAGAATTTTGCCCCGCAGCAACAGCAACAGGCTCCA
CAGCAGCAGGCTGCTCCTCAGCCTCAGTACAACGAGCCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.717

100

0.781
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.568
  ssb Neisseria meningitidis MC58

46.154

99.454

0.459
  ssb Neisseria gonorrhoeae MS11

45.304

98.907

0.448