Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   RDU00_RS13985 Genome accession   NZ_CP133449
Coordinates   2617366..2618061 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain KK195     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2612366..2623061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDU00_RS13960 (RDU00_13960) minD 2613302..2614108 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  RDU00_RS13965 (RDU00_13965) minC 2614110..2614790 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  RDU00_RS13970 (RDU00_13970) mreD 2614843..2615361 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  RDU00_RS13975 (RDU00_13975) mreC 2615358..2616230 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  RDU00_RS13980 (RDU00_13980) mreB 2616261..2617274 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RDU00_RS13985 (RDU00_13985) ysxA/radC 2617366..2618061 (-) 696 WP_003246034.1 RadC family protein Machinery gene
  RDU00_RS13990 (RDU00_13990) maf 2618098..2618667 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  RDU00_RS13995 (RDU00_13995) spoIIB 2618820..2619818 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  RDU00_RS14000 (RDU00_14000) comC 2619952..2620698 (-) 747 WP_010886586.1 prepilin peptidase Machinery gene
  RDU00_RS14005 (RDU00_14005) folC 2620838..2622130 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=799147 RDU00_RS13985 WP_003246034.1 2617366..2618061(-) (ysxA/radC) [Bacillus subtilis strain KK195]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=799147 RDU00_RS13985 WP_003246034.1 2617366..2618061(-) (ysxA/radC) [Bacillus subtilis strain KK195]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424