Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P1P91_RS14305 Genome accession   NZ_CP119391
Coordinates   3039495..3040049 (-) Length   184 a.a.
NCBI ID   WP_311883471.1    Uniprot ID   -
Organism   Halomonas piscis strain SG2L-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3034495..3045049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1P91_RS14285 (P1P91_14270) - 3035156..3035908 (-) 753 WP_311883464.1 GntR family transcriptional regulator -
  P1P91_RS14290 (P1P91_14275) - 3036386..3037849 (+) 1464 WP_311883466.1 solute carrier family 23 protein -
  P1P91_RS14295 (P1P91_14280) - 3038153..3038617 (+) 465 WP_311883468.1 META domain-containing protein -
  P1P91_RS14300 (P1P91_14285) - 3038646..3039419 (+) 774 WP_311883470.1 glucose 1-dehydrogenase -
  P1P91_RS14305 (P1P91_14290) ssb 3039495..3040049 (-) 555 WP_311883471.1 single-stranded DNA-binding protein Machinery gene
  P1P91_RS14310 (P1P91_14295) - 3040095..3041498 (-) 1404 WP_311883473.1 MFS transporter -
  P1P91_RS14315 (P1P91_14300) uvrA 3041826..3044675 (+) 2850 WP_311883474.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20575.52 Da        Isoelectric Point: 4.9160

>NTDB_id=798781 P1P91_RS14305 WP_311883471.1 3039495..3040049(-) (ssb) [Halomonas piscis strain SG2L-4]
MARGINKVILIGNLGQDPEVRFAPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVLFSKTAEIAQQYLRKGSKVYIE
GRLQTRKWQDQNGQDRYSTEVVCNDMQMLDSRGGGQQGGYPGGQQPYQQPAPQPQQPQQPQQQGYPGQQQQPAPQNPPQQ
GQQGGSYGAPNPDSFDDFDDEIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=798781 P1P91_RS14305 WP_311883471.1 3039495..3040049(-) (ssb) [Halomonas piscis strain SG2L-4]
ATGGCTCGTGGTATTAACAAGGTGATTCTTATCGGCAACCTCGGCCAGGATCCCGAGGTGCGTTTTGCGCCCTCGGGCAC
GGCCGTGGCCAACCTCAACCTGGCGACCACGGATACGTGGATGGACCGCCAGAGCGGCCAGCGCCAGGAGCGTACCGAGT
GGCACCGCGTCGTGCTGTTCAGCAAGACCGCGGAGATCGCCCAGCAGTATCTGCGCAAGGGCTCCAAGGTCTACATCGAA
GGGCGGCTGCAAACGCGCAAATGGCAGGATCAGAACGGCCAGGACCGCTACTCGACCGAAGTGGTGTGCAACGACATGCA
GATGCTCGACTCCCGCGGCGGTGGCCAGCAGGGTGGCTATCCGGGCGGGCAGCAGCCTTATCAGCAGCCTGCTCCCCAGC
CGCAGCAGCCGCAGCAGCCCCAGCAGCAGGGCTATCCGGGACAGCAACAGCAGCCGGCCCCGCAAAACCCGCCCCAGCAG
GGGCAGCAGGGCGGCAGCTACGGCGCCCCCAACCCCGATAGCTTCGACGACTTCGACGACGAGATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.186

100

0.592
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.5
  ssb Neisseria gonorrhoeae MS11

46.486

100

0.467
  ssb Neisseria meningitidis MC58

45.946

100

0.462