Detailed information NTG0798778

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P1P91_RS08825
• Genome accession: NZ_CP119391
• Coordinates: 1878247..1879080 (+)
• Length: 277 a.a.
• NCBI ID: WP_311882023.1
• Uniprot ID: -
• Organism: Halomonas piscis strain SG2L-4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1873247..1884080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P1P91_RS08800 (P1P91_08790)	-	1874110..1874373 (-)	264	WP_311885754.1	hypothetical protein	-
P1P91_RS08805 (P1P91_08795)	pilA	1874370..1874501 (-)	132	WP_311885756.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
P1P91_RS08810 (P1P91_08800)	-	1874564..1875019 (-)	456	WP_311882019.1	pilin	-
P1P91_RS08815 (P1P91_08805)	pilB	1875222..1876964 (+)	1743	WP_311882020.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P1P91_RS08820 (P1P91_08810)	-	1876971..1878197 (+)	1227	WP_311882021.1	type II secretion system F family protein	-
P1P91_RS08825 (P1P91_08815)	pilD	1878247..1879080 (+)	834	WP_311882023.1	A24 family peptidase	Machinery gene
P1P91_RS08830 (P1P91_08820)	coaE	1879077..1879679 (+)	603	WP_311882024.1	dephospho-CoA kinase	-
P1P91_RS08835 (P1P91_08825)	yacG	1879727..1879978 (+)	252	WP_311882026.1	DNA gyrase inhibitor YacG	-
P1P91_RS08840 (P1P91_08830)	-	1880028..1880921 (+)	894	WP_311882027.1	DNA replication terminus site-binding protein	-
P1P91_RS08845 (P1P91_08835)	-	1880912..1881232 (-)	321	WP_311882028.1	hypothetical protein	-
P1P91_RS08850 (P1P91_08840)	-	1881889..1882254 (-)	366	WP_311882030.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-

Sequence

Protein

• Length: 277 a.a.
• Molecular weight: 29771.04 Da
• Isoelectric Point: 9.9281

>NTDB_id=798778 P1P91_RS08825 WP_311882023.1 1878247..1879080(+) (pilD) [Halomonas piscis strain SG2L-4]
MAIPVLLLAALLGLCLGSFLNVVITRLPVMLMRRWRAEARAALALPDETPPRFNLATPPSLCPACEAPIRWHDNVPLLGW
LKRRGRCATCRARISVQYPAVELAGGALAVAAVALYGVGWQAGFILAACLALLAMAVIDLRTQLLPDALTLPLLWAGLLY
QLLFQPAMLAPAVIGAMAGYLVLWSLYWLFRLVTGKEGMGYGDFKLLAALGAWLGWSLLPLVLMLAAGFGALVGLALQAN
PRRRGLPMPFGPFLAMAGWAGLLAGNELMATYLRIMT

Nucleotide

• Length: 834 bp

>NTDB_id=798778 P1P91_RS08825 WP_311882023.1 1878247..1879080(+) (pilD) [Halomonas piscis strain SG2L-4]
ATGGCAATTCCCGTCTTACTGCTGGCCGCCCTGCTCGGCCTGTGCCTGGGCAGCTTTCTCAACGTGGTCATCACCCGGCT
GCCGGTGATGCTGATGCGCCGCTGGCGGGCCGAGGCCCGGGCGGCGCTGGCGCTGCCCGACGAAACCCCGCCGCGCTTCA
ACCTGGCAACGCCGCCCTCCCTCTGCCCGGCCTGCGAGGCGCCCATCCGCTGGCACGACAACGTGCCGCTGCTCGGCTGG
CTCAAGCGGCGCGGGCGCTGCGCGACCTGCCGGGCGCGGATCAGCGTGCAGTACCCAGCGGTGGAGCTCGCCGGCGGCGC
GCTCGCCGTGGCGGCGGTGGCGCTTTACGGCGTTGGCTGGCAGGCGGGCTTTATTCTCGCCGCCTGCCTTGCGCTGCTCG
CCATGGCGGTGATCGACCTTCGCACCCAGCTGCTGCCCGACGCGCTGACGCTGCCGCTTCTGTGGGCCGGGCTCTTGTAC
CAGCTGCTATTCCAGCCGGCGATGCTCGCCCCGGCGGTGATCGGCGCCATGGCGGGGTATCTGGTGCTCTGGAGCCTTTA
CTGGCTGTTCAGGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGCTCGCCGCGCTGGGCGCCTGGC
TGGGGTGGAGCCTGCTGCCGCTGGTGCTGATGCTCGCCGCCGGGTTCGGCGCGCTCGTCGGCCTGGCGCTGCAGGCCAAC
CCCCGGCGCCGGGGCCTGCCCATGCCCTTCGGCCCGTTTCTGGCCATGGCGGGCTGGGCCGGCCTGCTGGCGGGCAACGA
GCTGATGGCCACCTACCTGAGGATAATGACATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (11-114)

• Type IV leader peptidase family (Peptidase_A24) (128-235)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.471	98.195	0.505
pilD	Vibrio campbellii strain DS40M4	44.322	98.556	0.437
pilD	Acinetobacter baumannii D1279779	44.569	96.39	0.43
pilD	Acinetobacter nosocomialis M2	44.569	96.39	0.43
pilD	Neisseria gonorrhoeae MS11	44.528	95.668	0.426