Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Q3101_RS06005 Genome accession   NZ_CP133215
Coordinates   1285236..1286330 (-) Length   364 a.a.
NCBI ID   WP_064726928.1    Uniprot ID   -
Organism   Streptomyces sp. VNUA74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280236..1291330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3101_RS05985 (Q3101_05985) - 1280954..1281502 (-) 549 WP_064726924.1 adenine phosphoribosyltransferase -
  Q3101_RS05990 (Q3101_05990) secF 1281499..1282620 (-) 1122 WP_064726925.1 protein translocase subunit SecF -
  Q3101_RS05995 (Q3101_05995) secD 1282622..1284412 (-) 1791 WP_308882866.1 protein translocase subunit SecD -
  Q3101_RS06000 (Q3101_06000) yajC 1284554..1285060 (-) 507 WP_308882867.1 preprotein translocase subunit YajC -
  Q3101_RS06005 (Q3101_06005) ruvB 1285236..1286330 (-) 1095 WP_064726928.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Q3101_RS06010 (Q3101_06010) ruvA 1286359..1286964 (-) 606 WP_064726929.1 Holliday junction branch migration protein RuvA -
  Q3101_RS06015 (Q3101_06015) ruvC 1286961..1287536 (-) 576 WP_256031940.1 crossover junction endodeoxyribonuclease RuvC -
  Q3101_RS06020 (Q3101_06020) - 1287645..1288397 (-) 753 WP_064726931.1 YebC/PmpR family DNA-binding transcriptional regulator -
  Q3101_RS06025 (Q3101_06025) pdxT 1288476..1289081 (-) 606 WP_064726932.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  Q3101_RS06030 (Q3101_06030) pdxS 1289095..1290006 (-) 912 WP_064726933.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  Q3101_RS06035 (Q3101_06035) - 1290141..1290683 (-) 543 WP_064726934.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38532.87 Da        Isoelectric Point: 4.7048

>NTDB_id=798733 Q3101_RS06005 WP_064726928.1 1285236..1286330(-) (ruvB) [Streptomyces sp. VNUA74]
MNWDDTTDPSDAPEGLGAAEDRLVGSVADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAP
GLGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPG
ATAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYGPAELERVLHRSAGLLDVGIDTAGAAEIAGRSRGTPRIAN
RLLRRVRDYAQVKADGLVTREVAAAALAVYEVDDRGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPF
LVREGLLARTPRGRVATPAAWAHLGLTPPGARNTGNGQPDLFGT

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=798733 Q3101_RS06005 WP_064726928.1 1285236..1286330(-) (ruvB) [Streptomyces sp. VNUA74]
ATGAACTGGGACGACACCACCGACCCGTCCGACGCCCCCGAAGGACTCGGCGCCGCCGAGGACCGGCTGGTGGGCTCGGT
CGCCGACGGCGAGGACCAGGCGGTGGAGGCCGCCCTGCGTCCCAAGGACCTCGGCGAGTTCATCGGCCAGGAGAAGGTCC
GCGAGCAGCTCGACCTCGTGCTGCGGGCCGCCCGCGCGCGCGGGGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCG
GGTCTCGGCAAGACCACCCTCTCGATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCAT
CCAGCACGCCGGCGACCTCGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCA
TGTCGCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGC
GCCACCGCCATCCCGCTGGAGCTTCCCCCGTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTGCCGCCGCCGCT
GCGCGACCGCTTCGGCTTCACCGCCCACATGGAGTTCTACGGACCGGCCGAGCTGGAGCGCGTGCTCCACCGCTCGGCCG
GCCTGCTCGACGTCGGGATCGACACCGCGGGCGCCGCGGAGATCGCCGGCCGCTCCCGCGGCACTCCGCGCATCGCCAAC
CGCCTGCTGCGCCGGGTGCGCGACTACGCCCAGGTCAAGGCCGACGGCCTGGTCACCCGCGAGGTCGCCGCCGCCGCCCT
GGCGGTCTACGAGGTGGACGACCGGGGCCTGGACCGGCTCGACCGCGGTGTCCTGGAGGCGCTGCTCAAGCTCTTCGGCG
GCGGCCCCGTGGGCCTGTCCACGCTCGCCGTCGCGGTGGGGGAGGAGCGTGAGACAGTGGAAGAGGTCGCCGAACCCTTC
CTGGTGAGGGAAGGTCTCCTGGCCCGTACCCCCCGCGGGCGGGTCGCGACACCGGCGGCCTGGGCGCACCTCGGGCTCAC
CCCGCCCGGCGCGCGCAACACCGGAAACGGACAACCGGACTTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(39-197)

RuvB AAA lid domain (AAA_lid_4)

(200-273)

RuvB C-terminal winged helix domain (WHD_RuvB)

(275-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.636

90.659

0.486
  ruvB Synechocystis sp. PCC 6803

52.978

87.637

0.464
  ruvB Streptococcus pneumoniae TIGR4

51.235

89.011

0.456
  ruvB Streptococcus pneumoniae R6

51.235

89.011

0.456
  ruvB Streptococcus pneumoniae D39

51.235

89.011

0.456
  ruvB Helicobacter pylori 26695

50.482

85.44

0.431