Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PY250_RS13455 Genome accession   NZ_CP119334
Coordinates   2866777..2867316 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain 2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2861777..2872316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS13435 (PY250_13435) - 2862096..2862428 (-) 333 WP_005381196.1 hypothetical protein -
  PY250_RS13440 (PY250_13440) gspM 2862421..2863071 (-) 651 WP_005381197.1 type II secretion system protein GspM -
  PY250_RS13445 (PY250_13445) - 2863068..2864513 (-) 1446 WP_275593408.1 MSHA biogenesis protein MshI -
  PY250_RS13450 (PY250_13450) csrD 2864525..2866534 (-) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  PY250_RS13455 (PY250_13455) ssb 2866777..2867316 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  PY250_RS13460 (PY250_13460) qstR 2867594..2868238 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  PY250_RS13465 (PY250_13465) galU 2868398..2869270 (+) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  PY250_RS13470 (PY250_13470) uvrA 2869420..2872242 (+) 2823 WP_025767594.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=798558 PY250_RS13455 WP_005387798.1 2866777..2867316(-) (ssb) [Vibrio alginolyticus strain 2-1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=798558 PY250_RS13455 WP_005387798.1 2866777..2867316(-) (ssb) [Vibrio alginolyticus strain 2-1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTTATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464