Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P1A26_RS06890 Genome accession   NZ_CP119297
Coordinates   1465344..1465883 (-) Length   179 a.a.
NCBI ID   WP_064497314.1    Uniprot ID   -
Organism   Proteus mirabilis strain HK294     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1460344..1470883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A26_RS06840 (P1A26_06840) - 1460897..1462081 (+) 1185 WP_063693505.1 integrase arm-type DNA-binding domain-containing protein -
  P1A26_RS06845 (P1A26_06845) - 1462085..1462291 (-) 207 WP_004247694.1 AlpA family transcriptional regulator -
  P1A26_RS06850 (P1A26_06850) - 1462503..1463048 (-) 546 WP_159262593.1 phage N-6-adenine-methyltransferase -
  P1A26_RS06855 (P1A26_06855) - 1463038..1463391 (-) 354 WP_212647710.1 phage protein NinX family protein -
  P1A26_RS06860 (P1A26_06860) - 1463384..1463551 (-) 168 WP_275621973.1 hypothetical protein -
  P1A26_RS06865 (P1A26_06865) - 1463699..1464067 (-) 369 WP_063073714.1 hypothetical protein -
  P1A26_RS06870 (P1A26_06870) - 1464077..1464430 (-) 354 WP_063073715.1 hypothetical protein -
  P1A26_RS06875 (P1A26_06875) - 1464430..1464717 (-) 288 WP_206081148.1 cyclic-phosphate processing receiver domain-containing protein -
  P1A26_RS06880 (P1A26_06880) - 1464717..1465037 (-) 321 WP_275621974.1 ClpX C4-type zinc finger protein -
  P1A26_RS06885 (P1A26_06885) - 1465073..1465291 (-) 219 WP_142836744.1 hypothetical protein -
  P1A26_RS06890 (P1A26_06890) ssb 1465344..1465883 (-) 540 WP_064497314.1 single-stranded DNA-binding protein Machinery gene
  P1A26_RS06895 (P1A26_06895) - 1465873..1466568 (-) 696 WP_064497324.1 lambda exonuclease family protein -
  P1A26_RS06900 (P1A26_06900) - 1466568..1467494 (-) 927 WP_064497313.1 RecT family recombinase -
  P1A26_RS06905 (P1A26_06905) - 1467491..1467712 (-) 222 WP_064497312.1 hypothetical protein -
  P1A26_RS06910 (P1A26_06910) - 1467712..1468146 (-) 435 WP_081261671.1 SAM-dependent methyltransferase -
  P1A26_RS06915 (P1A26_06915) - 1468179..1468433 (-) 255 WP_064497311.1 hypothetical protein -
  P1A26_RS06920 (P1A26_06920) - 1468441..1468596 (-) 156 WP_165469462.1 hypothetical protein -
  P1A26_RS06925 (P1A26_06925) - 1468650..1468859 (-) 210 WP_049216804.1 DUF551 domain-containing protein -
  P1A26_RS06930 (P1A26_06930) - 1468934..1469083 (-) 150 WP_157836032.1 hypothetical protein -
  P1A26_RS06935 (P1A26_06935) - 1469250..1469786 (+) 537 WP_061064261.1 super-infection exclusion protein B -
  P1A26_RS06940 (P1A26_06940) - 1469798..1470115 (-) 318 WP_080047885.1 hypothetical protein -
  P1A26_RS06945 (P1A26_06945) - 1470130..1470342 (-) 213 WP_275621975.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19754.20 Da        Isoelectric Point: 8.0241

>NTDB_id=798279 P1A26_RS06890 WP_064497314.1 1465344..1465883(-) (ssb) [Proteus mirabilis strain HK294]
MASKGVNKVILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQSGEMKEKTEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNVGGTMQMLGGNGGNQAGSQKPQQNQGWGQPQAPKAPQQQPKQQTPQSEPPQDWDD
PIPFAPIGLPYPRHAIYVI

Nucleotide


Download         Length: 540 bp        

>NTDB_id=798279 P1A26_RS06890 WP_064497314.1 1465344..1465883(-) (ssb) [Proteus mirabilis strain HK294]
ATGGCAAGTAAAGGCGTTAACAAAGTTATTCTCATTGGCCACTTGGGGCAAGATCCTGAAATCCGCTATATGCCATCAGG
TGGCGCAGTAGCAAATCTCACACTAGCCACATCGGAATCGTGGCGTGATAAACAAAGCGGTGAAATGAAAGAAAAAACCG
AGTGGCATCGAGTGTGCATCTTCGGCAAATTAGCAGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAGGGCTCACTGCAAACCAGAAAATGGCAAGACCAAAGCGGACAAGACCGATACACAACGGAAGTAGTAGTTAATGTCGG
TGGCACAATGCAGATGTTGGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAACCACAGCAGAATCAAGGATGGGGGC
AACCGCAAGCACCGAAAGCACCGCAACAACAACCTAAACAACAAACACCGCAAAGTGAACCTCCTCAAGATTGGGATGAT
CCTATACCTTTTGCCCCTATCGGACTCCCCTACCCACGCCACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.225

99.441

0.698
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.525
  ssb Neisseria gonorrhoeae MS11

45.455

98.324

0.447
  ssb Neisseria meningitidis MC58

44.886

98.324

0.441