Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PZA08_RS06625 Genome accession   NZ_CP119180
Coordinates   1352595..1353092 (+) Length   165 a.a.
NCBI ID   WP_017504124.1    Uniprot ID   A0A2X1BAH6
Organism   Brevundimonas nasdae strain X8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1347595..1358092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZA08_RS06605 (PZA08_06605) - 1347658..1348482 (+) 825 WP_066626172.1 flagellin -
  PZA08_RS06610 (PZA08_06610) - 1348543..1351251 (+) 2709 WP_316409530.1 transcriptional regulator -
  PZA08_RS06615 (PZA08_06615) - 1351333..1352004 (+) 672 WP_066550824.1 hypothetical protein -
  PZA08_RS06620 (PZA08_06620) - 1352004..1352426 (+) 423 WP_174086328.1 hypothetical protein -
  PZA08_RS06625 (PZA08_06625) ssb 1352595..1353092 (+) 498 WP_017504124.1 single-stranded DNA-binding protein Machinery gene
  PZA08_RS06630 (PZA08_06630) - 1353211..1354149 (+) 939 WP_316409531.1 DMT family transporter -
  PZA08_RS06635 (PZA08_06635) - 1354179..1354712 (+) 534 WP_316409532.1 DUF1003 domain-containing protein -
  PZA08_RS06640 (PZA08_06640) - 1354751..1355326 (-) 576 WP_045810201.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17815.66 Da        Isoelectric Point: 5.9696

>NTDB_id=798105 PZA08_RS06625 WP_017504124.1 1352595..1353092(+) (ssb) [Brevundimonas nasdae strain X8]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=798105 PZA08_RS06625 WP_017504124.1 1352595..1353092(+) (ssb) [Brevundimonas nasdae strain X8]
ATGGCGGGCAGCGTCAATAAGGTCATTTTGGTCGGCAATCTGGGGCGCGACCCCGAAATCCGCTCCATGCCCAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAAGTGGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGCAGGGCGTCGAGAAATATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGTTCGGAAGGCGGCTCGTCAGGCGGTGGTTACGGCGGCGGCGGTGGTCGCG
GCGATGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAGCCGAGCGGCCCCAAGGAAAGCTACGACCTGAAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1BAH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.533
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436