Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBI06_RS03985 Genome accession   NZ_CP133093
Coordinates   852917..853414 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 847917..858414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI06_RS03970 (RBI06_03970) bfr 847925..848389 (+) 465 WP_003093668.1 bacterioferritin -
  RBI06_RS03975 (RBI06_03975) uvrA 848461..851298 (-) 2838 WP_033989579.1 excinuclease ABC subunit UvrA Machinery gene
  RBI06_RS03980 (RBI06_03980) - 851512..852900 (+) 1389 WP_024917981.1 MFS transporter -
  RBI06_RS03985 (RBI06_03985) ssb 852917..853414 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RBI06_RS03990 (RBI06_03990) pchA 853503..854933 (-) 1431 WP_033989580.1 isochorismate synthase PchA -
  RBI06_RS03995 (RBI06_03995) pchB 854930..855235 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  RBI06_RS04000 (RBI06_04000) pchC 855235..855990 (-) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  RBI06_RS04005 (RBI06_04005) pchD 855987..857630 (-) 1644 WP_033989581.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=798083 RBI06_RS03985 WP_003114685.1 852917..853414(+) (ssb) [Pseudomonas aeruginosa strain 002]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=798083 RBI06_RS03985 WP_003114685.1 852917..853414(+) (ssb) [Pseudomonas aeruginosa strain 002]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515