Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBH01_RS03785 Genome accession   NZ_CP132997
Coordinates   785864..786361 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain ZYPA162     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 780864..791361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH01_RS03770 (RBH01_03770) bfr 780872..781336 (+) 465 WP_003093668.1 bacterioferritin -
  RBH01_RS03775 (RBH01_03775) uvrA 781408..784245 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  RBH01_RS03780 (RBH01_03780) - 784459..785847 (+) 1389 WP_009316331.1 MFS transporter -
  RBH01_RS03785 (RBH01_03785) ssb 785864..786361 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  RBH01_RS03790 (RBH01_03790) pchA 786450..787880 (-) 1431 WP_015502296.1 isochorismate synthase PchA -
  RBH01_RS03795 (RBH01_03795) pchB 787877..788182 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  RBH01_RS03800 (RBH01_03800) pchC 788182..788937 (-) 756 WP_096253244.1 pyochelin biosynthesis editing thioesterase PchC -
  RBH01_RS03805 (RBH01_03805) pchD 788934..790577 (-) 1644 WP_096253245.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=797905 RBH01_RS03785 WP_003114685.1 785864..786361(+) (ssb) [Pseudomonas aeruginosa strain ZYPA162]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=797905 RBH01_RS03785 WP_003114685.1 785864..786361(+) (ssb) [Pseudomonas aeruginosa strain ZYPA162]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515