Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PXV45_RS04285 Genome accession   NZ_CP119109
Coordinates   856377..856847 (+) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GENOMIC22-001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 851377..861847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV45_RS04245 (PXV45_04245) - 851496..851651 (-) 156 Protein_834 hypothetical protein -
  PXV45_RS04250 (PXV45_04250) - 851705..852025 (+) 321 WP_001120936.1 DUF771 domain-containing protein -
  PXV45_RS04255 (PXV45_04255) - 852022..852183 (+) 162 WP_000066011.1 DUF1270 domain-containing protein -
  PXV45_RS04260 (PXV45_04260) - 852276..852536 (+) 261 WP_000291488.1 DUF1108 family protein -
  PXV45_RS04265 (PXV45_04265) - 852545..852808 (+) 264 WP_001205732.1 hypothetical protein -
  PXV45_RS04270 (PXV45_04270) - 852805..854756 (+) 1952 Protein_839 AAA family ATPase -
  PXV45_RS04275 (PXV45_04275) - 854758..855678 (+) 921 WP_000138475.1 recombinase RecT -
  PXV45_RS04280 (PXV45_04280) - 855759..856376 (+) 618 WP_072460574.1 MBL fold metallo-hydrolase -
  PXV45_RS04285 (PXV45_04285) ssbA 856377..856847 (+) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  PXV45_RS04290 (PXV45_04290) - 856877..857761 (+) 885 WP_107303195.1 DnaD domain protein -
  PXV45_RS04295 (PXV45_04295) - 857768..857986 (+) 219 WP_000338528.1 hypothetical protein -
  PXV45_RS04300 (PXV45_04300) - 857995..858399 (+) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  PXV45_RS04305 (PXV45_04305) - 858412..858780 (+) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  PXV45_RS04310 (PXV45_04310) - 858784..859026 (+) 243 WP_000131381.1 phi PVL orf 51-like protein -
  PXV45_RS04315 (PXV45_04315) - 859041..859295 (+) 255 WP_107303196.1 DUF1024 family protein -
  PXV45_RS04320 (PXV45_04320) - 859282..859452 (+) 171 WP_000714407.1 hypothetical protein -
  PXV45_RS04325 (PXV45_04325) - 859445..859981 (+) 537 WP_031881549.1 dUTPase -
  PXV45_RS04330 (PXV45_04330) - 860018..860224 (+) 207 WP_000195794.1 DUF1381 domain-containing protein -
  PXV45_RS04335 (PXV45_04335) - 860221..860424 (+) 204 WP_000141180.1 hypothetical protein -
  PXV45_RS04340 (PXV45_04340) - 860417..860653 (+) 237 WP_107303198.1 hypothetical protein -
  PXV45_RS04345 (PXV45_04345) - 860643..861032 (+) 390 WP_001596346.1 hypothetical protein -
  PXV45_RS04350 (PXV45_04350) - 861029..861178 (+) 150 WP_000595265.1 transcriptional activator RinB -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=797678 PXV45_RS04285 WP_000934770.1 856377..856847(+) (ssbA) [Staphylococcus aureus strain GENOMIC22-001]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=797678 PXV45_RS04285 WP_000934770.1 856377..856847(+) (ssbA) [Staphylococcus aureus strain GENOMIC22-001]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365