Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RBH63_RS04795 Genome accession   NZ_CP132983
Coordinates   611225..611761 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ARS-C301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 606225..616761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH63_RS04775 soxR 607953..608417 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  RBH63_RS04780 soxS 608503..608826 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RBH63_RS04785 pdeC 608829..610415 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  RBH63_RS04790 yjcB 610845..611126 (+) 282 WP_001295689.1 YjcB family protein -
  RBH63_RS04795 ssb 611225..611761 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RBH63_RS04800 uvrA 612015..614837 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  RBH63_RS04805 yjbR 614872..615228 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RBH63_RS04810 yjbQ 615232..615648 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RBH63_RS04815 aphA 615759..616472 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=797616 RBH63_RS04795 WP_000168305.1 611225..611761(-) (ssb) [Escherichia coli strain ARS-C301]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=797616 RBH63_RS04795 WP_000168305.1 611225..611761(-) (ssb) [Escherichia coli strain ARS-C301]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489