Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWH52_RS01625 Genome accession   NZ_CP119084
Coordinates   346374..346910 (+) Length   178 a.a.
NCBI ID   WP_024557296.1    Uniprot ID   -
Organism   Franconibacter daqui strain HNU6-13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 341374..351910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWH52_RS01620 uvrA 343315..346143 (-) 2829 WP_188724427.1 excinuclease ABC subunit UvrA -
  PWH52_RS01625 ssb 346374..346910 (+) 537 WP_024557296.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PWH52_RS01630 - 347151..347495 (+) 345 WP_338464166.1 hypothetical protein -
  PWH52_RS01635 - 347531..347809 (-) 279 WP_024557294.1 YjcB family protein -
  PWH52_RS01640 - 349035..350642 (+) 1608 WP_024559907.1 EAL domain-containing protein -
  PWH52_RS01645 soxS 350630..350953 (-) 324 WP_024557292.1 superoxide response transcriptional regulator SoxS -
  PWH52_RS01650 soxR 351038..351496 (+) 459 WP_024557291.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19041.03 Da        Isoelectric Point: 5.2358

>NTDB_id=797606 PWH52_RS01625 WP_024557296.1 346374..346910(+) (ssb) [Franconibacter daqui strain HNU6-13]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANLRLATSESWRDKQTGEMKEVTEWHSVVLYGKLAEVAGEYLRKGSQIYI
EGQLRTRKWQDQSGQDRYSTEVVVNVGGTMQMLGGRQGGGAPAGGGMGGGQQQQGGWGQPQQPQGGNAQFSGGAQSRPQQ
SSAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=797606 PWH52_RS01625 WP_024557296.1 346374..346910(+) (ssb) [Franconibacter daqui strain HNU6-13]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAAGACCCGGAAGTACGCTATATGCCGAACGG
CGGGGCCGTGGCGAACCTGCGCCTGGCGACGTCAGAATCCTGGCGCGATAAGCAAACCGGCGAGATGAAAGAAGTAACCG
AATGGCACAGCGTAGTGCTGTACGGCAAACTGGCGGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGATTTATATC
GAAGGCCAACTGCGTACCCGCAAATGGCAGGATCAGAGCGGTCAGGATCGCTACTCCACTGAAGTGGTGGTAAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCGCCAGCAGGCGGCGGCATGGGTGGCGGCCAGCAGCAGC
AAGGCGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCGGCAATGCGCAGTTCAGCGGCGGCGCGCAGTCTCGCCCTCAGCAA
TCTTCGGCGCCGTCTAACGAGCCGCCGATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.775
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.59
  ssb Neisseria meningitidis MC58

46.591

98.876

0.461
  ssb Neisseria gonorrhoeae MS11

46.591

98.876

0.461