Detailed information NTG0797594

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PX653_RS17385
• Genome accession: NZ_CP119083
• Coordinates: 3930785..3932221 (-)
• Length: 478 a.a.
• NCBI ID: WP_277414009.1
• Uniprot ID: -
• Organism: Pseudoduganella chitinolytica strain ACM 3522
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3912514..3940266	3930785..3932221	within	0

Gene organization within MGE regions

Location: 3912514..3940266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX653_RS17315 (PX653_17315)	-	3914507..3915259 (+)	753	WP_277414002.1	nucleotidyltransferase domain-containing protein	-
PX653_RS17320 (PX653_17320)	-	3915279..3916115 (-)	837	WP_277414003.1	hypothetical protein	-
PX653_RS17325 (PX653_17325)	-	3916182..3916952 (-)	771	Protein_3420	ISL3 family transposase	-
PX653_RS17335 (PX653_17335)	-	3918216..3918650 (-)	435	WP_277413485.1	helix-turn-helix domain-containing protein	-
PX653_RS17340 (PX653_17340)	-	3918804..3919916 (-)	1113	WP_277414004.1	ribonucleotide-diphosphate reductase subunit beta	-
PX653_RS17345 (PX653_17345)	-	3920135..3921139 (-)	1005	Protein_3424	ribonucleoside-diphosphate reductase subunit alpha	-
PX653_RS17350 (PX653_17350)	-	3921225..3922529 (-)	1305	WP_277414005.1	hypothetical protein	-
PX653_RS17355 (PX653_17355)	-	3922530..3922931 (-)	402	WP_277414006.1	hypothetical protein	-
PX653_RS17360 (PX653_17360)	-	3923528..3924699 (+)	1172	Protein_3427	IS3 family transposase	-
PX653_RS17365 (PX653_17365)	-	3924877..3925237 (-)	361	Protein_3428	ribonucleoside-diphosphate reductase subunit alpha	-
PX653_RS17370 (PX653_17370)	-	3925417..3925644 (-)	228	WP_277414007.1	DUF2188 domain-containing protein	-
PX653_RS17375 (PX653_17375)	-	3926008..3927120 (-)	1113	WP_277414004.1	ribonucleotide-diphosphate reductase subunit beta	-
PX653_RS17380 (PX653_17380)	-	3927339..3930281 (-)	2943	WP_277414008.1	ribonucleoside-diphosphate reductase subunit alpha	-
PX653_RS17385 (PX653_17385)	pilR	3930785..3932221 (-)	1437	WP_277414009.1	sigma-54 dependent transcriptional regulator	Regulator
PX653_RS17390 (PX653_17390)	-	3932248..3933930 (-)	1683	WP_277414010.1	PAS domain-containing sensor histidine kinase	-
PX653_RS17395 (PX653_17395)	-	3933947..3934207 (-)	261	WP_277414011.1	PP0621 family protein	-
PX653_RS17400 (PX653_17400)	-	3934204..3935007 (-)	804	WP_277414012.1	inner membrane protein YpjD	-
PX653_RS17405 (PX653_17405)	-	3935239..3936036 (-)	798	WP_277414013.1	ABC transporter ATP-binding protein	-
PX653_RS17410 (PX653_17410)	-	3936038..3936859 (-)	822	WP_277414014.1	ABC transporter permease	-
PX653_RS17415 (PX653_17415)	-	3936869..3937837 (-)	969	WP_277414015.1	ABC transporter substrate-binding protein	-
PX653_RS17420 (PX653_17420)	-	3938139..3939350 (+)	1212	WP_277414016.1	hypothetical protein	-
PX653_RS17425 (PX653_17425)	-	3939933..3940079 (+)	147	WP_277414017.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 51398.11 Da
• Isoelectric Point: 5.1584

>NTDB_id=797594 PX653_RS17385 WP_277414009.1 3930785..3932221(-) (pilR) [Pseudoduganella chitinolytica strain ACM 3522]
MSSPRVLVVDDEDDLRELLEITLLKMGLDVDSAADLRQARAHLAAGAEYGLVLTDMRLPDGLGLELVREVAASGRNTPIA
VVTAFGSTDNAVVALKAGAFDYVTKPVQLDQLRQLVQSALKLNGSAPAARDEAVDSRLKGQSAAMQALRAQIARLARSMA
PIAITGESGSGKELAAREIHAQSSRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAAHGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGKFRQDLFYRLNVIELALPPLRERLDDLPVLT
AAILARLAAGGPPAVLGPGVLEALRSYRFPGNVRELENVLERALAFANDGVIHVEDLALKGARLAEAGQPEPVAAPADPP
AAVVEPPPVLASAPAGMPPLPDLTVLPSNLPEYLERVEREIIVRALAQTQYNRTQAAQLLGLSFRQLRYQMQKLNIKE

Nucleotide

• Length: 1437 bp

>NTDB_id=797594 PX653_RS17385 WP_277414009.1 3930785..3932221(-) (pilR) [Pseudoduganella chitinolytica strain ACM 3522]
ATGAGTTCTCCCCGGGTACTGGTCGTCGACGACGAAGACGACCTGCGCGAGCTGCTGGAAATCACGCTGCTGAAGATGGG
CCTGGACGTGGACAGCGCAGCGGACCTGCGGCAGGCCCGCGCGCACCTGGCGGCCGGCGCCGAGTACGGGCTGGTGCTGA
CGGACATGCGCCTGCCCGACGGCCTGGGGCTGGAACTGGTGCGGGAGGTGGCCGCCAGCGGGCGCAACACGCCGATTGCC
GTCGTCACCGCGTTCGGCAGTACCGACAACGCCGTCGTCGCCCTCAAGGCGGGCGCGTTCGACTACGTGACGAAACCCGT
GCAGCTGGATCAATTGCGCCAGCTGGTGCAGTCGGCGCTGAAGCTGAACGGGTCGGCGCCGGCGGCGCGCGACGAGGCGG
TGGACAGCCGCCTGAAGGGGCAGTCGGCCGCGATGCAGGCGCTGCGCGCCCAGATCGCGCGGCTGGCGCGCTCGATGGCG
CCGATCGCCATCACGGGCGAATCGGGCAGTGGCAAGGAGCTGGCGGCGCGCGAGATCCACGCCCAGAGCTCGCGCGCGGA
CAAGCCGTTCGTCGCGGTCAACTGCGGGGCGATTCCCGAAGCGTTGATGGAAGCGGAGTTCTTCGGCTACCGCAAGGGCG
CCTTCACCGGGGCGGCGGACGAGCGCGACGGCTTCTTCCAGGCCGCCCACGGCGGCACCTTGATGCTGGACGAAGTGGCC
GACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACGGCCGA
GGAACCGGTGGACGTGCGCATCGTCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTCGAGCAGGGCAAGTTCCGCCAGG
ACCTGTTCTATCGCCTGAACGTCATCGAACTGGCGCTGCCGCCGCTGCGCGAACGGCTGGACGACCTGCCGGTGCTGACG
GCGGCGATCCTGGCGCGCCTGGCGGCGGGCGGCCCGCCGGCCGTGCTGGGCCCGGGCGTGCTGGAAGCGCTGCGCAGCTA
CCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACGTGCTGGAACGGGCGCTGGCGTTTGCCAACGACGGCGTCATCCACG
TCGAGGACCTGGCGCTGAAGGGCGCGCGGCTGGCGGAGGCGGGTCAGCCGGAACCGGTCGCGGCGCCGGCCGATCCGCCG
GCGGCGGTCGTCGAGCCGCCTCCGGTCTTGGCCTCGGCTCCGGCCGGCATGCCGCCGCTGCCGGACCTGACGGTGTTGCC
GTCGAACCTGCCGGAATACCTGGAGCGGGTGGAGCGCGAGATCATCGTGCGGGCGCTGGCGCAGACGCAGTACAACCGTA
CCCAGGCCGCGCAGCTGCTGGGGTTGAGTTTCCGGCAGCTGCGCTACCAGATGCAGAAGCTCAACATCAAGGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-116)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (434-474)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	54.603	100	0.546
pilR	Acinetobacter baumannii strain A118	44.654	99.791	0.446