Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RAB72_RS01650 Genome accession   NZ_CP132979
Coordinates   248899..249435 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ARS-C101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243899..254435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB72_RS01630 aphA 244188..244901 (+) 714 WP_001307512.1 acid phosphatase AphA -
  RAB72_RS01635 yjbQ 245012..245428 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RAB72_RS01640 yjbR 245432..245788 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RAB72_RS01645 uvrA 245823..248645 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  RAB72_RS01650 ssb 248899..249435 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RAB72_RS01655 yjcB 249534..249815 (-) 282 WP_001295689.1 YjcB family protein -
  RAB72_RS01660 pdeC 250245..251831 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  RAB72_RS01665 soxS 251834..252157 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RAB72_RS01670 soxR 252243..252707 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=797539 RAB72_RS01650 WP_000168305.1 248899..249435(+) (ssb) [Escherichia coli strain ARS-C101]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=797539 RAB72_RS01650 WP_000168305.1 248899..249435(+) (ssb) [Escherichia coli strain ARS-C101]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489