Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PZB78_RS10030 Genome accession   NZ_CP119073
Coordinates   1965623..1965958 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain SW207     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960623..1970958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS10010 (PZB78_09975) gcvT 1961214..1962302 (-) 1089 WP_151175141.1 glycine cleavage system aminomethyltransferase GcvT -
  PZB78_RS10015 (PZB78_09980) - 1962745..1964418 (+) 1674 WP_127696774.1 DEAD/DEAH box helicase -
  PZB78_RS10020 (PZB78_09985) - 1964438..1965232 (+) 795 WP_127696773.1 YqhG family protein -
  PZB78_RS10025 (PZB78_09990) sinI 1965416..1965589 (+) 174 WP_024122036.1 anti-repressor SinI Regulator
  PZB78_RS10030 (PZB78_09995) sinR 1965623..1965958 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PZB78_RS10035 (PZB78_10000) tasA 1966045..1966830 (-) 786 WP_106020091.1 biofilm matrix protein TasA -
  PZB78_RS10040 (PZB78_10005) sipW 1966895..1967479 (-) 585 WP_105955579.1 signal peptidase I SipW -
  PZB78_RS10045 (PZB78_10010) tapA 1967451..1968212 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  PZB78_RS10050 (PZB78_10015) - 1968490..1968813 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  PZB78_RS10055 (PZB78_10020) - 1968856..1969035 (-) 180 WP_003236949.1 YqzE family protein -
  PZB78_RS10060 (PZB78_10025) comGG 1969107..1969481 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  PZB78_RS10065 (PZB78_10030) comGF 1969482..1969865 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  PZB78_RS10070 (PZB78_10035) comGE 1969891..1970238 (-) 348 WP_106020095.1 competence type IV pilus minor pilin ComGE Machinery gene
  PZB78_RS10075 (PZB78_10040) comGD 1970222..1970653 (-) 432 WP_255003480.1 competence type IV pilus minor pilin ComGD Machinery gene
  PZB78_RS10080 (PZB78_10045) comGC 1970643..1970939 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=797476 PZB78_RS10030 WP_003226345.1 1965623..1965958(+) (sinR) [Bacillus halotolerans strain SW207]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=797476 PZB78_RS10030 WP_003226345.1 1965623..1965958(+) (sinR) [Bacillus halotolerans strain SW207]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1