Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Q7C01_RS08245 Genome accession   NZ_CP132975
Coordinates   1850862..1853081 (+) Length   739 a.a.
NCBI ID   WP_266470599.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845862..1858081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS08235 (Q7C01_08235) - 1845900..1848839 (-) 2940 WP_266470604.1 tetratricopeptide repeat protein -
  Q7C01_RS08240 (Q7C01_08240) - 1848836..1850674 (-) 1839 WP_306688251.1 HSP90 family protein -
  Q7C01_RS08245 (Q7C01_08245) recG 1850862..1853081 (+) 2220 WP_266470599.1 ATP-dependent DNA helicase RecG Machinery gene
  Q7C01_RS08250 (Q7C01_08250) rsmD 1853195..1853782 (+) 588 WP_306688252.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q7C01_RS08255 (Q7C01_08255) coaD 1853809..1854288 (+) 480 WP_184908493.1 pantetheine-phosphate adenylyltransferase -
  Q7C01_RS08260 (Q7C01_08260) - 1854410..1855507 (+) 1098 WP_266470595.1 cell division initiation protein -
  Q7C01_RS08265 (Q7C01_08265) - 1855636..1856286 (+) 651 WP_266470593.1 DUF177 domain-containing protein -
  Q7C01_RS08270 (Q7C01_08270) rpmF 1856289..1856462 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  Q7C01_RS08275 (Q7C01_08275) rnc 1856470..1857318 (+) 849 WP_266470591.1 ribonuclease III -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80225.98 Da        Isoelectric Point: 6.4033

>NTDB_id=797480 Q7C01_RS08245 WP_266470599.1 1850862..1853081(+) (recG) [Streptomyces sp. FXY-T5]
MDLVPALEEPLRQPLKSVLGPATAKVMAEHLGLLTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHSFA
SAKAPRGKGQRLEVTITDGSGRLQLVFFGAGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDPEESVEAWA
GALIPIYPATAKLESWKIGKAIQTVLPTAQEAVDPLPETLREGRGLVPLPEALLKIHRPHTKADIEDARSRLKWDEAFVL
QVALARRRHADAQLPAVPRKPAPDGILAAFDARLPFTLTDGQQRVSREIFDDLATDHPMHRLLQGEVGSGKTMVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGSEQATKVVLLTGSMGAAARRHALLDLTTGEAGIVIGTHA
LIEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLSRAWERVREEVENGHQAYVVCPRIGDEEDDPKKSAKKKSPEDEAEKRPPLAVLDVAGHLSKGPLQGLRVEV
LHGRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPE
ASPARQRLGAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLKVLAVIEDEEIIAEAREEATAVVAADPELTHFPAL
RTALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=797480 Q7C01_RS08245 WP_266470599.1 1850862..1853081(+) (recG) [Streptomyces sp. FXY-T5]
ATGGATCTCGTGCCCGCACTGGAAGAACCCCTGCGACAACCGCTGAAGTCGGTGCTCGGCCCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCTCACGGTCGGCGACCTCCTCCACCACTACCCGCGCAGATACGAGGAGCGCGGCCAGCTCA
CTCACCTCGCCGACCTCCCCATGGACGAGCACGTCACGGTGGTCGCACAGGTCGCCGACGCCCGCCTGCACTCCTTCGCC
TCCGCCAAGGCCCCGCGCGGCAAGGGCCAGCGCCTGGAGGTCACGATCACGGACGGCAGCGGCCGGCTCCAACTGGTCTT
CTTCGGCGCGGGCGTCCACAAGCCCCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCGGGCAAGGTCTCCGTCT
TCAACCGCCGCCTCCAACTCGCCCACCCGGCATACGAGTTGCTGCGCGGCGACCCGGAGGAGTCCGTCGAGGCGTGGGCA
GGGGCCCTGATCCCGATCTACCCCGCCACCGCCAAGCTCGAGTCCTGGAAGATCGGCAAGGCGATCCAGACGGTCCTGCC
CACCGCTCAGGAGGCCGTCGACCCGCTCCCGGAGACCCTGCGCGAGGGCCGCGGCCTGGTGCCCCTCCCCGAGGCCCTCC
TCAAGATCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGCTCCCGTCTCAAATGGGACGAGGCCTTCGTCCTC
CAGGTCGCCCTGGCCCGCCGCCGCCACGCGGACGCCCAACTCCCCGCCGTCCCCCGCAAGCCGGCCCCCGACGGCATCCT
CGCCGCCTTCGACGCCCGCCTCCCCTTCACCCTCACCGACGGCCAGCAGCGTGTCTCCCGGGAGATCTTCGACGACCTGG
CCACCGACCACCCGATGCACCGGCTGTTGCAGGGGGAGGTCGGTTCGGGCAAGACCATGGTCGCCCTGCGGGCCATGCTC
GCCGTGGTCGACGCGGGCGGCCAGGCCGCCATGCTCGCGCCCACCGAAGTGCTCGCGCAGCAGCACCACCGGTCCGTCGT
CGAGATGATGGGCGAGCTGGCCGAGGGCGGCATGCTGGGCGGGTCCGAGCAGGCCACCAAGGTCGTGCTGCTCACCGGTT
CCATGGGAGCGGCCGCCCGGCGGCACGCCCTGCTCGACCTCACCACCGGAGAGGCCGGCATCGTCATCGGCACGCACGCG
CTGATCGAGGACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTCGAGCAGCG
CGACGCCCTGCGCGGCAAGGGCAAACAGCCCCCGCATCTGCTGGTCATGACGGCCACGCCCATCCCGCGCACGGTCGCCA
TGACCGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCGGCCGGCCGCTCGCCGATCGCCAGCCATGTGGTC
CCGGCCGCCGACAAGCCCCACTTCCTGTCCCGCGCGTGGGAAAGGGTCCGCGAGGAGGTGGAGAACGGCCACCAGGCCTA
TGTGGTCTGCCCCCGCATCGGCGACGAGGAGGACGACCCCAAGAAGTCCGCCAAGAAGAAGTCCCCGGAGGACGAGGCGG
AGAAGCGCCCGCCCCTCGCCGTCCTCGACGTGGCCGGCCACTTGTCCAAGGGGCCCCTGCAGGGCCTGCGGGTGGAGGTG
CTCCACGGGAGGATGCACCCCGACGACAAGGACGCCGTCATGCGCCGCTTCGCCGCCGGCGAGACCCATGTCCTGGTCGC
CACCACGGTCATCGAGGTCGGTGTCAACGTCCCCAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCT
CCCAGCTCCACCAGCTGCGCGGCCGCGTCGGCCGTGGCTCAGCCCCCGGCCTCTGCCTCCTGGTCACCGAGATGCCCGAG
GCGAGCCCGGCCCGCCAGCGCCTGGGCGCGGTCGCCTCCACCCTCGACGGCTTCGAACTCTCCCGCATCGACCTGGAACA
ACGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGTCGGGAGCCAGGACCTCCCTGAAGGTCCTCGCCGTCATCGAGGACG
AGGAGATCATCGCGGAGGCGAGGGAGGAAGCGACGGCGGTGGTGGCCGCCGACCCGGAGCTGACCCACTTCCCGGCCCTC
CGGACGGCTCTGGACGCCCTCCTGGACGAGGAGAGGGAGCAGTACCTGGAGAAGGGGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(300-452)

Helicase conserved C-terminal domain (Helicase_C)

(551-626)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(654-715)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

38.506

94.181

0.363