Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q7C01_RS07170 Genome accession   NZ_CP132975
Coordinates   1608453..1609094 (-) Length   213 a.a.
NCBI ID   WP_266471484.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603453..1614094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS07150 (Q7C01_07150) atpD 1603966..1605402 (+) 1437 WP_266471490.1 F0F1 ATP synthase subunit beta -
  Q7C01_RS07155 (Q7C01_07155) - 1605514..1605891 (+) 378 WP_184908659.1 F0F1 ATP synthase subunit epsilon -
  Q7C01_RS07160 (Q7C01_07160) - 1606022..1606468 (+) 447 WP_030854234.1 DUF2550 domain-containing protein -
  Q7C01_RS07165 (Q7C01_07165) - 1606504..1608327 (-) 1824 WP_306688202.1 glycoside hydrolase family 18 chitinase -
  Q7C01_RS07170 (Q7C01_07170) vraR 1608453..1609094 (-) 642 WP_266471484.1 response regulator transcription factor Regulator
  Q7C01_RS07175 (Q7C01_07175) - 1609091..1610284 (-) 1194 WP_266471482.1 sensor histidine kinase -
  Q7C01_RS07180 (Q7C01_07180) - 1610437..1611018 (+) 582 WP_266471480.1 hypothetical protein -
  Q7C01_RS07185 (Q7C01_07185) - 1611015..1611203 (+) 189 WP_266471479.1 DUF5708 family protein -
  Q7C01_RS07190 (Q7C01_07190) - 1611204..1611776 (-) 573 WP_185013188.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  Q7C01_RS07195 (Q7C01_07195) - 1611796..1612539 (-) 744 WP_266471520.1 ABC transporter permease -
  Q7C01_RS07200 (Q7C01_07200) - 1612557..1613339 (-) 783 WP_306688203.1 ABC transporter ATP-binding protein -
  Q7C01_RS07205 (Q7C01_07205) - 1613419..1614060 (+) 642 WP_266471474.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22584.18 Da        Isoelectric Point: 4.8446

>NTDB_id=797475 Q7C01_RS07170 WP_266471484.1 1608453..1609094(-) (vraR) [Streptomyces sp. FXY-T5]
MIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEQGVALARELRPDLVLMDVQMPRLDGVSATRQIVAEGLADVLVL
TTFDLDEYVFGALRAGASGFLLKNTEARELLEAVRTVARGEGMIAPAVTRRLIAEFAAKPARAPAADPAVLDRLTRRERE
VLSCLGEGLSNAGIAGRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGI

Nucleotide


Download         Length: 642 bp        

>NTDB_id=797475 Q7C01_RS07170 WP_266471484.1 1608453..1609094(-) (vraR) [Streptomyces sp. FXY-T5]
ATGATCCGCGTCCTGGTCGCCGAGGACCAGTCCGCCGTCCGCGCCGGCCTGGTCCTGATCCTGGGCAGCGCCCCCGACAT
CGAGGTGGTCGGCGAGGCCGCGGACGGTGAGCAGGGGGTGGCGCTGGCCCGGGAGCTGCGGCCGGACCTGGTGCTGATGG
ACGTTCAGATGCCCCGCCTGGACGGGGTGTCGGCGACCCGGCAGATCGTCGCGGAAGGGCTCGCGGACGTGCTGGTGCTG
ACCACGTTCGACCTCGACGAGTACGTCTTCGGGGCGCTGCGGGCGGGCGCGTCGGGCTTCCTGCTGAAGAACACCGAGGC
GAGGGAGCTGCTGGAGGCGGTGCGGACGGTCGCGCGCGGGGAGGGGATGATCGCCCCGGCGGTCACGCGGCGGCTGATCG
CGGAGTTCGCCGCGAAGCCGGCGCGCGCGCCGGCGGCCGATCCGGCCGTGCTGGACCGGCTCACCCGGCGCGAACGCGAG
GTGCTGTCCTGCCTGGGCGAAGGCCTGTCCAACGCGGGCATCGCCGGGCGACTGGACATGGCCGAGGCGACCGTGAAGAC
CCACGTCAGCCGGCTGCTGGGGAAGCTGGAGCTGCGCAGCCGCGTGCAAGCGGCGGTGCTGGCTCAGGAGTTGGGGATCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.827

97.653

0.408
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399