Detailed information NTG0797300

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: RBB55_RS04420
• Genome accession: NZ_CP132915
• Coordinates: 910451..911569 (-)
• Length: 372 a.a.
• NCBI ID: WP_000347034.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain A207
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 905451..916569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBB55_RS04390 (RBB55_04385)	-	906280..907128 (+)	849	WP_029574891.1	class II glutamine amidotransferase	-
RBB55_RS04395 (RBB55_04390)	-	907381..907836 (+)	456	WP_029574892.1	bacteriohemerythrin	-
RBB55_RS04400 (RBB55_04395)	-	907989..909056 (+)	1068	WP_002084046.1	hypothetical protein	-
RBB55_RS04405 (RBB55_04400)	-	909056..909379 (+)	324	WP_032068534.1	RnfH family protein	-
RBB55_RS04410 (RBB55_04405)	-	909434..909832 (-)	399	WP_001170994.1	outer membrane protein assembly factor BamE	-
RBB55_RS04415 (RBB55_04410)	fur	909944..910381 (+)	438	WP_001122847.1	ferric iron uptake transcriptional regulator	-
RBB55_RS04420 (RBB55_04415)	pilU	910451..911569 (-)	1119	WP_000347034.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
RBB55_RS04425 (RBB55_04420)	pilT	911597..912634 (-)	1038	WP_000355489.1	type IV pilus twitching motility protein PilT	Machinery gene
RBB55_RS04430 (RBB55_04425)	-	912761..913453 (+)	693	WP_002124845.1	YggS family pyridoxal phosphate-dependent enzyme	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41891.09 Da
• Isoelectric Point: 6.6943

>NTDB_id=797300 RBB55_RS04420 WP_000347034.1 910451..911569(-) (pilU) [Acinetobacter baumannii strain A207]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRKEFADTRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ

Nucleotide

• Length: 1119 bp

>NTDB_id=797300 RBB55_RS04420 WP_000347034.1 910451..911569(-) (pilU) [Acinetobacter baumannii strain A207]
ATGGATTTTAATGACCTGCTCAACCTGATGGTTGAAAAAAAATCATCGGATCTCTTTATTACAGATGGCGTTGCGCCTTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTAATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAAAGAATTTGCAGACACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTACAGTTACCACCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTCGTAGGCGCGACAG
GTACAGGTAAATCCACTTCATTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAAGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGCTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCACAGCCAGCTTTACATGGATTTGTCACTTAACTTAAAGGCTATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCGCTTAAACATGCTGATTCACCGAACGATTTGCG
TTTAACCATTAAACTTGCAGATGAAGGTCCCGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGATCGTCAGTAA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (34-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Acinetobacter baylyi ADP1	75.661	100	0.769
pilU	Pseudomonas stutzeri DSM 10701	69.022	98.925	0.683
pilU	Vibrio cholerae strain A1552	53.243	99.462	0.53
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.908	93.011	0.39