Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   RA292_RS13655 Genome accession   NZ_CP132912
Coordinates   2635332..2636027 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2630332..2641027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS13630 minD 2631268..2632074 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  RA292_RS13635 minC 2632076..2632756 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  RA292_RS13640 mreD 2632809..2633327 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  RA292_RS13645 mreC 2633324..2634196 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  RA292_RS13650 mreB 2634227..2635240 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  RA292_RS13655 ysxA/radC 2635332..2636027 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  RA292_RS13660 maf 2636064..2636633 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  RA292_RS13665 spoIIB 2636786..2637784 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  RA292_RS13670 comC 2637918..2638664 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  RA292_RS13675 folC 2638804..2640096 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=797235 RA292_RS13655 WP_003246034.1 2635332..2636027(-) (ysxA/radC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=797235 RA292_RS13655 WP_003246034.1 2635332..2636027(-) (ysxA/radC) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424