Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYU99_RS01675 Genome accession   NZ_CP118993
Coordinates   363529..364104 (-) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain K521     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 350983..363364 363529..364104 flank 165


Gene organization within MGE regions


Location: 350983..364104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYU99_RS01615 (PYU99_01615) - 351097..351567 (+) 471 WP_017780886.1 hypothetical protein -
  PYU99_RS01620 (PYU99_01620) - 351777..351968 (+) 192 WP_017780887.1 hypothetical protein -
  PYU99_RS01625 (PYU99_01625) tetR 352300..352935 (-) 636 WP_017780888.1 tetracycline resistance transcriptional repressor TetR -
  PYU99_RS01630 (PYU99_01630) tet(E) 353016..354233 (+) 1218 WP_017780889.1 tetracycline efflux MFS transporter Tet(E) -
  PYU99_RS01635 (PYU99_01635) - 354321..354989 (-) 669 WP_017780890.1 hypothetical protein -
  PYU99_RS01640 (PYU99_01640) - 355148..355309 (-) 162 Protein_308 IS5/IS1182 family transposase -
  PYU99_RS01645 (PYU99_01645) - 355527..357689 (-) 2163 WP_025202554.1 AAA family ATPase -
  PYU99_RS01650 (PYU99_01650) - 357686..358123 (-) 438 WP_025202555.1 VPA1267 family protein -
  PYU99_RS01655 (PYU99_01655) - 358123..358602 (-) 480 WP_049866848.1 hypothetical protein -
  PYU99_RS01660 (PYU99_01660) - 358590..360467 (-) 1878 WP_041207315.1 integrase -
  PYU99_RS01665 (PYU99_01665) - 360477..362045 (-) 1569 WP_171269322.1 site-specific integrase -
  PYU99_RS01670 (PYU99_01670) - 362042..363364 (-) 1323 WP_041207317.1 site-specific integrase -
  PYU99_RS01675 (PYU99_01675) ssb 363529..364104 (-) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=797189 PYU99_RS01675 WP_005328769.1 363529..364104(-) (ssb) [Aeromonas media strain K521]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=797189 PYU99_RS01675 WP_005328769.1 363529..364104(-) (ssb) [Aeromonas media strain K521]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTTGACAGCTT
CACCGGCGTAATGCAAATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTATGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGATGA
CGATATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45