Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYW31_RS12210 Genome accession   NZ_CP118976
Coordinates   2532466..2532987 (-) Length   173 a.a.
NCBI ID   WP_046836916.1    Uniprot ID   A0A1S2MQH3
Organism   Staphylococcus succinus strain DSM 14617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2527466..2537987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS12210 ssbA 2532466..2532987 (-) 522 WP_046836916.1 single-stranded DNA-binding protein Machinery gene
  PYW31_RS12215 rpsF 2533006..2533311 (-) 306 WP_046836917.1 30S ribosomal protein S6 -
  PYW31_RS12220 - 2533744..2534550 (+) 807 WP_046836918.1 GH25 family lysozyme -
  PYW31_RS12225 ychF 2534682..2535779 (-) 1098 WP_046836919.1 redox-regulated ATPase YchF -
  PYW31_RS12230 - 2535780..2535995 (-) 216 WP_046836920.1 DUF951 domain-containing protein -
  PYW31_RS12235 - 2536016..2536900 (-) 885 WP_046836921.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19133.61 Da        Isoelectric Point: 4.9056

>NTDB_id=797094 PYW31_RS12210 WP_046836916.1 2532466..2532987(-) (ssbA) [Staphylococcus succinus strain DSM 14617]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHAQEGNNNSQDYGQSFGGQQSGQNTSSYQNNNNNSSNNNAQSNNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=797094 PYW31_RS12210 WP_046836916.1 2532466..2532987(-) (ssbA) [Staphylococcus succinus strain DSM 14617]
ATGATAAATAGAGTTGTTTTAGTTGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACCTTAGCGGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATAAACTGTGTTGTTT
TTAGAAAGCAAGCAGATAATGTGAATAACTACTTATCAAAAGGTAGTTTGGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGACGTCGTATTTTTGTAACAGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGCCATGCTCAAGAAGGGAATAACAATTCTCAAGATTATGGACAAAGTTTTGGTGGTCAACAATCAGGTC
AAAATACGTCATCTTATCAAAACAACAACAATAATTCATCGAATAATAATGCTCAATCAAACAATCCATTTGCTAATGCA
AACGGACCGATTGATATTAGCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MQH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.89

100

0.63
  ssb Latilactobacillus sakei subsp. sakei 23K

55.491

100

0.555
  ssb Glaesserella parasuis strain SC1401

34.375

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

63.584

0.37