Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PYW31_RS06625 Genome accession   NZ_CP118976
Coordinates   1350566..1350883 (+) Length   105 a.a.
NCBI ID   WP_046836542.1    Uniprot ID   -
Organism   Staphylococcus succinus strain DSM 14617     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345566..1355883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS06595 - 1345641..1345841 (+) 201 WP_046836828.1 YqgQ family protein -
  PYW31_RS06600 - 1346461..1347447 (+) 987 WP_046836547.1 glucokinase -
  PYW31_RS06605 - 1347447..1347770 (+) 324 WP_046836546.1 MTH1187 family thiamine-binding protein -
  PYW31_RS06610 - 1347772..1348395 (+) 624 WP_046836545.1 MBL fold metallo-hydrolase -
  PYW31_RS06615 comGA 1348529..1349503 (+) 975 WP_046836544.1 competence type IV pilus ATPase ComGA Machinery gene
  PYW31_RS06620 comGB 1349475..1350542 (+) 1068 WP_046836543.1 competence type IV pilus assembly protein ComGB -
  PYW31_RS06625 comGC 1350566..1350883 (+) 318 WP_046836542.1 competence type IV pilus major pilin ComGC Machinery gene
  PYW31_RS06630 comGD 1350864..1351307 (+) 444 WP_235602285.1 competence type IV pilus minor pilin ComGD -
  PYW31_RS06635 - 1351294..1351593 (+) 300 WP_046836540.1 hypothetical protein -
  PYW31_RS06640 - 1351628..1352008 (+) 381 WP_082104711.1 ComGF family competence protein -
  PYW31_RS06645 - 1352173..1352688 (+) 516 WP_046836537.1 shikimate kinase -
  PYW31_RS06650 gcvT 1352870..1353961 (+) 1092 WP_046836536.1 glycine cleavage system aminomethyltransferase GcvT -
  PYW31_RS06655 gcvPA 1353979..1355331 (+) 1353 WP_046836535.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11799.07 Da        Isoelectric Point: 9.5650

>NTDB_id=797081 PYW31_RS06625 WP_046836542.1 1350566..1350883(+) (comGC) [Staphylococcus succinus strain DSM 14617]
MKKRFKIFNKDAFTLIEMLLVLLIISLLLILIIPNIAKQSKHIQATGCEAQLKMIDSQIEAYTLKFNKKPTSVEDLVTEG
YIKENQKQCKSGAMITISNGEAIAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=797081 PYW31_RS06625 WP_046836542.1 1350566..1350883(+) (comGC) [Staphylococcus succinus strain DSM 14617]
ATGAAAAAACGCTTTAAAATTTTTAACAAAGATGCTTTTACATTAATTGAAATGTTGCTAGTACTACTCATTATCAGTTT
ATTATTAATTTTAATTATTCCAAATATTGCAAAACAATCTAAACATATACAAGCTACAGGTTGTGAAGCGCAACTTAAAA
TGATAGACAGCCAAATAGAAGCTTATACATTAAAATTCAATAAAAAACCTACATCTGTAGAAGATTTGGTCACTGAAGGT
TACATAAAAGAAAATCAGAAACAATGTAAGTCAGGTGCTATGATAACAATTAGTAATGGTGAAGCTATTGCGAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.529

97.143

0.714
  comGC Staphylococcus aureus N315

73.529

97.143

0.714
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

89.524

0.381
  comYC Streptococcus mutans UA140

45.238

80

0.362
  comYC Streptococcus mutans UA159

45.238

80

0.362