Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW33_RS14340 Genome accession   NZ_CP118963
Coordinates   2977700..2978287 (-) Length   195 a.a.
NCBI ID   WP_004647277.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2972700..2983287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS14315 - 2973460..2973687 (+) 228 WP_004647282.1 hypothetical protein -
  PYW33_RS14325 - 2974044..2974892 (-) 849 WP_004647281.1 SAM-dependent methyltransferase -
  PYW33_RS14330 - 2974896..2976203 (-) 1308 WP_004647280.1 FAD-dependent oxidoreductase -
  PYW33_RS14335 ahpC 2976825..2977388 (-) 564 WP_004647278.1 alkyl hydroperoxide reductase subunit C -
  PYW33_RS14340 ssb 2977700..2978287 (-) 588 WP_004647277.1 single-stranded DNA-binding protein Machinery gene
  PYW33_RS14345 - 2978339..2979703 (-) 1365 WP_016807025.1 MFS transporter -
  PYW33_RS14350 - 2979857..2980945 (-) 1089 WP_004647275.1 DUF475 domain-containing protein -
  PYW33_RS14355 tenA 2981168..2981839 (+) 672 WP_004281386.1 thiaminase II -
  PYW33_RS14360 - 2981887..2983191 (-) 1305 WP_004282307.1 IS4 family transposase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21387.12 Da        Isoelectric Point: 6.4820

>NTDB_id=796935 PYW33_RS14340 WP_004647277.1 2977700..2978287(-) (ssb) [Acinetobacter lwoffii strain DSM 2403]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAVDLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=796935 PYW33_RS14340 WP_004647277.1 2977700..2978287(-) (ssb) [Acinetobacter lwoffii strain DSM 2403]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTTTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAGCAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGTAATAACCCGCAATCGGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAATAATAACCCGAGTGGTTTTGCGCCGAAATCTGCACCTGCTCCAACAGCAGCGCCTGCAGT
AGATCTAGATGATGACTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369