Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PYW33_RS00960 Genome accession   NZ_CP118963
Coordinates   234384..235523 (-) Length   379 a.a.
NCBI ID   WP_004644873.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 229384..240523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS00935 - 229637..230629 (-) 993 WP_004644868.1 pirin family protein -
  PYW33_RS00940 - 230771..231370 (-) 600 WP_004644869.1 hypothetical protein -
  PYW33_RS00945 - 231695..232240 (-) 546 WP_004281007.1 glutathione peroxidase -
  PYW33_RS00950 - 232431..233327 (+) 897 WP_004644871.1 DMT family transporter -
  PYW33_RS00955 - 233773..234342 (-) 570 WP_004644872.1 L-threonylcarbamoyladenylate synthase -
  PYW33_RS00960 dprA 234384..235523 (-) 1140 WP_004644873.1 DNA-processing protein DprA Machinery gene
  PYW33_RS00965 tsaP 235615..236769 (-) 1155 WP_004644874.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PYW33_RS00970 def 236890..237420 (+) 531 WP_004644875.1 peptide deformylase -
  PYW33_RS00975 - 237513..237923 (+) 411 WP_004644876.1 DUF2946 family protein -
  PYW33_RS00980 - 237996..240083 (+) 2088 WP_004644877.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42631.35 Da        Isoelectric Point: 6.8410

>NTDB_id=796899 PYW33_RS00960 WP_004644873.1 234384..235523(-) (dprA) [Acinetobacter lwoffii strain DSM 2403]
MLNTLSTAQIHAITLWYLLQHSLSSFYKISQHYADLAHAIDGSQTETWRKLGIHKNHIQRLQDFQSSESQLHFQRSLEQI
QLHSDFVLLHTDAEYPQQLSHYAHKPPILFGQGYADQLLQPQIAIVGSRKPSLHGRQVAYDFAFYLSEQGFYINSGLAQG
IDEAAHQAALQHRRTIAVMGTGIEQTYPAAHQTLRQQIIEHGGTVITEFLPFTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LKSGSLLTAQWAAEQGKTTFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEELALATQWQALENTTKTKVIEATSQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSALTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=796899 PYW33_RS00960 WP_004644873.1 234384..235523(-) (dprA) [Acinetobacter lwoffii strain DSM 2403]
ATGTTGAATACATTGTCGACAGCGCAAATCCATGCCATTACGCTGTGGTATTTACTGCAACACTCCCTCAGCAGCTTTTA
TAAAATCAGTCAGCATTATGCAGACCTCGCCCATGCAATTGATGGTTCTCAAACCGAAACCTGGCGTAAGTTGGGCATTC
ATAAAAACCACATTCAGCGCCTGCAAGATTTCCAGTCAAGTGAGTCGCAGCTCCATTTTCAGCGCAGTCTTGAGCAGATC
CAGTTGCACAGTGACTTTGTGCTTTTACATACAGATGCCGAATATCCACAGCAATTGAGCCATTATGCGCATAAGCCGCC
AATCCTGTTCGGGCAAGGGTATGCAGATCAATTGCTGCAACCGCAAATCGCGATTGTGGGGAGTCGCAAGCCCAGTCTGC
ACGGCCGGCAAGTCGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTTTATATTAATAGTGGCCTGGCACAAGGG
ATTGATGAAGCCGCACATCAGGCCGCATTACAACATCGGCGAACGATTGCAGTGATGGGCACAGGCATTGAACAGACCTA
CCCTGCTGCCCATCAAACACTACGTCAGCAAATCATCGAACATGGAGGTACGGTCATTACTGAGTTTTTGCCATTTACTC
CCCCCTTACAGCAGCATTTTCCACGGCGTAACCGAATTGTCAGTGGCTTAAGCCTCGGGGTGATTGTGGCAGAAGCCGCC
TTGAAAAGCGGTTCATTGCTGACCGCACAATGGGCAGCGGAACAAGGCAAGACCACATTCGCCATCCCGGGGCATATTTA
CAGTGAACATCACCAGGGCTGTCACCAACTGATTCGTGAAGGTGCGATTCTGATTGACCATCCACAGCAGGTCATCGAAG
AACTGGCGCTGGCCACGCAATGGCAAGCTTTGGAAAACACCACCAAAACGAAAGTTATTGAAGCAACATCACAGCAAATT
CCACCGCATCTGCTCAGTCTGTATAATCAGCTGGACTGGGTGGGACAGAGTTTGGATCAACTGGGAACGCAGGTTCAGCA
AGAGGTATCTGCTTTGACCAGCCAACTCATGGAACTGGAGTTACTCGGTTTTTGTACCCAGCAAGCCGGCCTCTATCTAC
GTTGTCGGATTCTCAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

60.904

99.208

0.604
  dprA Acinetobacter baumannii D1279779

60.372

99.208

0.599
  dprA Acinetobacter baylyi ADP1

57.105

100

0.573