Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PYW33_RS00965 Genome accession   NZ_CP118963
Coordinates   235615..236769 (-) Length   384 a.a.
NCBI ID   WP_004644874.1    Uniprot ID   N8NV81
Organism   Acinetobacter lwoffii strain DSM 2403     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230615..241769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW33_RS00940 - 230771..231370 (-) 600 WP_004644869.1 hypothetical protein -
  PYW33_RS00945 - 231695..232240 (-) 546 WP_004281007.1 glutathione peroxidase -
  PYW33_RS00950 - 232431..233327 (+) 897 WP_004644871.1 DMT family transporter -
  PYW33_RS00955 - 233773..234342 (-) 570 WP_004644872.1 L-threonylcarbamoyladenylate synthase -
  PYW33_RS00960 dprA 234384..235523 (-) 1140 WP_004644873.1 DNA-processing protein DprA Machinery gene
  PYW33_RS00965 tsaP 235615..236769 (-) 1155 WP_004644874.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PYW33_RS00970 def 236890..237420 (+) 531 WP_004644875.1 peptide deformylase -
  PYW33_RS00975 - 237513..237923 (+) 411 WP_004644876.1 DUF2946 family protein -
  PYW33_RS00980 - 237996..240083 (+) 2088 WP_004644877.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42218.45 Da        Isoelectric Point: 9.0687

>NTDB_id=796900 PYW33_RS00965 WP_004644874.1 235615..236769(-) (tsaP) [Acinetobacter lwoffii strain DSM 2403]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTSALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKTFDQLSYAYVLESELPIKVGANIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=796900 PYW33_RS00965 WP_004644874.1 235615..236769(-) (tsaP) [Acinetobacter lwoffii strain DSM 2403]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTTTGTGT
CGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTAGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGTAATAAGCACGTGAAAAATCCACATTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCCGTGATTCCGCTTGAACATATTAAGCAGTGGCTGGAA
CGCTATACCCTTCTGGCGCCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGTCAGAAAGTCTATGCACGTGGTCACGGCCTGGTAGTGGGTCAACGCTATGCGGTGTATCGTGAAGCTGAACCGT
ATGTATTTACGGATGCAAATGGCAAGAAATATACGTCTGCACTCGAGCTGCAACAGGTGGCATCTGGTATTGCGGTACGT
GGCGAAGGTGATGTCACCACACTTGAACTGACAGATAGTTACAATGCAGAAGTACGTCGTGGTGATCGCGTCTTGCCTGA
ATACGATCCAATGTTACCGACCCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACAGCAGCACGTCATAGTGTCGTCACCATTGACCGTGGTACGGCACATGGGGTCCAGACGGGTCAT
GTCTTTAGCGTGAATCAAAAAGGTGAAGTGGTGACTGATCCGAAAACCAAAGAACGGGTGCAATTACCGGGCGAGCGTAT
TGGTCAGGTCATGGTATTTAAAACCTTCGATCAATTGAGCTACGCTTATGTGCTGGAAAGTGAATTACCAATCAAGGTTG
GTGCCAACATTCAGCCGCCACTATTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8NV81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685