Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYW38_RS27260 Genome accession   NZ_CP118958
Coordinates   5243849..5244370 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5238849..5249370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW38_RS27240 rplI 5240059..5240505 (-) 447 WP_002130186.1 50S ribosomal protein L9 -
  PYW38_RS27245 - 5240502..5242475 (-) 1974 WP_002016460.1 DHH family phosphoesterase -
  PYW38_RS27250 - 5242554..5243489 (-) 936 WP_002130187.1 YybS family protein -
  PYW38_RS27255 rpsR 5243571..5243804 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  PYW38_RS27260 ssbA 5243849..5244370 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  PYW38_RS27265 rpsF 5244397..5244687 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  PYW38_RS27270 ychF 5244879..5245979 (-) 1101 WP_000524661.1 redox-regulated ATPase YchF -
  PYW38_RS27275 - 5246095..5246292 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  PYW38_RS27280 - 5246313..5247170 (-) 858 WP_000362302.1 mechanosensitive ion channel family protein -
  PYW38_RS27285 yyaC 5247431..5248027 (+) 597 WP_001020734.1 spore protease YyaC -
  PYW38_RS27290 spo0J 5248048..5248899 (-) 852 WP_175491564.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=796860 PYW38_RS27260 WP_000981963.1 5243849..5244370(-) (ssbA) [Bacillus mycoides strain DSM 2048]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=796860 PYW38_RS27260 WP_000981963.1 5243849..5244370(-) (ssbA) [Bacillus mycoides strain DSM 2048]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382