Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RA165_RS22070 Genome accession   NZ_CP132550
Coordinates   4264449..4264985 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain XL1-Blue     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4259449..4269985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA165_RS22050 aphA 4259738..4260451 (+) 714 WP_001226928.1 acid phosphatase AphA -
  RA165_RS22055 yjbQ 4260562..4260978 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RA165_RS22060 yjbR 4260982..4261338 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RA165_RS22065 uvrA 4261373..4264195 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  RA165_RS22070 ssb 4264449..4264985 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RA165_RS22075 yjcB 4265084..4265365 (-) 282 WP_001295689.1 YjcB family protein -
  RA165_RS22080 pdeC 4265795..4267381 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  RA165_RS22085 soxS 4267384..4267707 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RA165_RS22090 soxR 4267793..4268257 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=796751 RA165_RS22070 WP_000168305.1 4264449..4264985(+) (ssb) [Escherichia coli strain XL1-Blue]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=796751 RA165_RS22070 WP_000168305.1 4264449..4264985(+) (ssb) [Escherichia coli strain XL1-Blue]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489