Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYV58_RS21210 Genome accession   NZ_CP118892
Coordinates   4533318..4533926 (-) Length   202 a.a.
NCBI ID   WP_004718569.1    Uniprot ID   A0A6A1RT07
Organism   Acinetobacter sp. TAC-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4528318..4538926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS21180 (PYV58_21180) ycaC 4529080..4529706 (+) 627 WP_004818434.1 isochorismate family cysteine hydrolase YcaC -
  PYV58_RS21185 (PYV58_21185) - 4529838..4530761 (+) 924 WP_034611312.1 LysR substrate-binding domain-containing protein -
  PYV58_RS21190 (PYV58_21190) ahpC 4530830..4531393 (-) 564 WP_004718560.1 alkyl hydroperoxide reductase subunit C -
  PYV58_RS21195 (PYV58_21195) - 4531614..4531949 (+) 336 WP_034611310.1 hypothetical protein -
  PYV58_RS21200 (PYV58_21200) - 4531983..4532618 (-) 636 WP_034611308.1 TetR/AcrR family transcriptional regulator -
  PYV58_RS21205 (PYV58_21205) - 4532769..4533233 (+) 465 WP_034611305.1 hotdog fold domain-containing protein -
  PYV58_RS21210 (PYV58_21210) ssb 4533318..4533926 (-) 609 WP_004718569.1 single-stranded DNA-binding protein Machinery gene
  PYV58_RS21215 (PYV58_21215) - 4533978..4535342 (-) 1365 WP_034611303.1 MFS transporter -
  PYV58_RS21220 (PYV58_21220) - 4535482..4536564 (-) 1083 WP_171066888.1 DUF475 domain-containing protein -
  PYV58_RS21225 (PYV58_21225) tenA 4536799..4537470 (+) 672 WP_004818427.1 thiaminase II -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21878.59 Da        Isoelectric Point: 6.4829

>NTDB_id=796122 PYV58_RS21210 WP_004718569.1 4533318..4533926(-) (ssb) [Acinetobacter sp. TAC-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNSGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEGAAADNGGYNQPRFNNNQQGGFNNNQGGGGYANQGNQGGGYGNA
NPQGGYGNGGNNVNQGFQSPKPAAAPSAPTAAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=796122 PYV58_RS21210 WP_004718569.1 4533318..4533926(-) (ssb) [Acinetobacter sp. TAC-1]
ATGCGTGGTGTAAATAAAGTTATTTTAGTTGGTACTTTAGGTCGTGATCCTGAGACTAAAACTTTCCCAAATGGGGGTTC
TCTCACTCAATTTTCAATTGCGACAAGTGAATCTTGGACAGACAAAAATTCTGGTGAAAGAAAAGAACAAACGGAATGGC
ATCGTATTGTATTGCACAACCGTTTAGGTGAGATTGCACAGCAGTATTTACGTAAAGGCTCAAAAGTTTATATTGAAGGT
TCTTTACGTACCCGTCAGTGGACGGATCAAAATGGTCAAGAGCGCTATACCACTGAAATTCGTGGCGAACAAATGCAGAT
GCTTGATAACAACCGTCAACAAGGTGAAGGCGCTGCTGCTGACAATGGTGGTTATAACCAACCACGTTTCAATAACAACC
AGCAAGGTGGTTTTAACAACAACCAAGGCGGTGGCGGTTATGCGAATCAAGGTAATCAAGGTGGTGGTTACGGCAATGCC
AATCCACAAGGTGGCTATGGCAATGGCGGAAACAATGTAAACCAAGGTTTTCAATCGCCTAAACCTGCAGCTGCACCATC
AGCACCTACTGCTGCCCCTGCGGATTTGGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A1RT07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.51

100

0.5
  ssb Vibrio cholerae strain A1552

42.927

100

0.436
  ssb Neisseria meningitidis MC58

38.942

100

0.401
  ssb Neisseria gonorrhoeae MS11

38.942

100

0.401