Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW04_RS02560 Genome accession   NZ_CP118874
Coordinates   566346..566891 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain KT2440 Design 1a post-ALE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 561346..571891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW04_RS02545 bfr 561441..561905 (+) 465 WP_003255449.1 bacterioferritin -
  PYW04_RS02550 uvrA 561978..564812 (-) 2835 WP_010951778.1 excinuclease ABC subunit UvrA -
  PYW04_RS02555 - 564942..566336 (+) 1395 WP_010951779.1 MFS transporter -
  PYW04_RS02560 ssb 566346..566891 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  PYW04_RS02565 - 566982..568364 (-) 1383 WP_020192246.1 PLP-dependent aminotransferase family protein -
  PYW04_RS02570 - 568565..569350 (+) 786 WP_049588015.1 TSUP family transporter -
  PYW04_RS02575 - 569372..570133 (+) 762 WP_010951782.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=796038 PYW04_RS02560 WP_003255446.1 566346..566891(+) (ssb) [Pseudomonas putida strain KT2440 Design 1a post-ALE]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=796038 PYW04_RS02560 WP_003255446.1 566346..566891(+) (ssb) [Pseudomonas putida strain KT2440 Design 1a post-ALE]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGCGACCCGTACAACCAAGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492