Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RAH33_RS30510 Genome accession   NZ_CP132352
Coordinates   6391852..6392376 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY11352     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6386852..6397376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAH33_RS30495 (RAH33_30515) aroB 6387968..6389074 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  RAH33_RS30500 (RAH33_30520) aroK 6389124..6389642 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RAH33_RS30505 (RAH33_30525) pilQ 6389654..6391798 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  RAH33_RS30510 (RAH33_30530) comL/pilP 6391852..6392376 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RAH33_RS30515 (RAH33_30535) pilO 6392373..6392996 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  RAH33_RS30520 (RAH33_30540) pilN 6392993..6393589 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RAH33_RS30525 (RAH33_30545) pilM 6393589..6394653 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RAH33_RS30530 (RAH33_30550) - 6394838..6397309 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=796038 RAH33_RS30510 WP_003095836.1 6391852..6392376(-) (comL/pilP) [Pseudomonas aeruginosa strain NY11352]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=796038 RAH33_RS30510 WP_003095836.1 6391852..6392376(-) (comL/pilP) [Pseudomonas aeruginosa strain NY11352]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362