Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYH59_RS05855 Genome accession   NZ_CP118856
Coordinates   1151238..1153610 (+) Length   790 a.a.
NCBI ID   WP_103268856.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain 7046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146238..1158610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH59_RS05835 (PYH59_05835) sal(B) 1146547..1148172 (+) 1626 WP_282822254.1 ABC-F type ribosomal protection protein Sal(B) -
  PYH59_RS05840 (PYH59_05840) - 1148232..1149380 (+) 1149 WP_103268859.1 cysteine desulfurase family protein -
  PYH59_RS05845 (PYH59_05845) mnmA 1149373..1150482 (+) 1110 WP_064204504.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYH59_RS05850 (PYH59_05850) - 1150570..1151235 (+) 666 WP_103268857.1 tetratricopeptide repeat protein -
  PYH59_RS05855 (PYH59_05855) recD2 1151238..1153610 (+) 2373 WP_103268856.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYH59_RS05860 (PYH59_05860) alaS 1153859..1156489 (+) 2631 WP_103268855.1 alanine--tRNA ligase -
  PYH59_RS05865 (PYH59_05865) - 1156557..1156826 (+) 270 WP_016998515.1 IreB family regulatory phosphoprotein -
  PYH59_RS05870 (PYH59_05870) ruvX 1156819..1157247 (+) 429 WP_016998516.1 Holliday junction resolvase RuvX -
  PYH59_RS05875 (PYH59_05875) - 1157270..1157575 (+) 306 WP_016998517.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89921.22 Da        Isoelectric Point: 4.6379

>NTDB_id=795887 PYH59_RS05855 WP_103268856.1 1151238..1153610(+) (recD2) [Mammaliicoccus lentus strain 7046]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDHEVTIVGYFPQIVEGETYLFKGKVIEHPKYGKQLQAD
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVNKLGENALQKILDDPDVLEEIPKLNKQKRSTIVESIRENQAIERIM
IKLNELGFGPKLAMSIYQTYKEETMNIIKQSPYRLVMDINGIGFQRADQIAEQIGISKDHNERVVAGVNYYLDQQSLQNG
HTFLPIDILINGAYELLNHNQPEVVAKEQINDVMVEMSEESKIIIEDNNCFMPSLYYSEAKSVQIMHRLYQHQEDLKEIE
KSDLQLHIGEIEDMNDVSYAEGQKNALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLDYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNNIPVSINEKHHDRSFISCNSNQIASVVEKVVQGA
VKKGYNMQDIQVLAPIYRGPAGINKLNQLLQDILNPKTEETRFLQYGEVEYREQDKVLQLINRPDDNVFNGDIGVVIGVY
KAEENALGKDVIIVDYEGNEITYTKQDLSEVTHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEENAFNQGIKTLGNGRMTSFDTKLKLYFSNDDTEEPTEIKNLILTEENMYEIDPMINMQNKTPYDFMK

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=795887 PYH59_RS05855 WP_103268856.1 1151238..1153610(+) (recD2) [Mammaliicoccus lentus strain 7046]
TTGGAAAATTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATATTATTTCAAAATAGTGATAACTA
TTACACTGTTATAAAAGTTGATGTGATGGATTCAAATGAAGATTTTGACCATGAAGTCACTATAGTAGGGTATTTTCCTC
AAATTGTAGAAGGTGAAACTTATCTTTTTAAAGGTAAGGTTATTGAACATCCTAAATATGGAAAGCAACTTCAAGCTGAC
ACTTTCGAGAAAGAATTACCTCAAACGAAACAAGGTGTCATTCATTATTTGTCCAGTGATTTATTTAAAGGAATAGGTAA
GAAAACTGCAGAGACAATCGTCAATAAATTGGGTGAAAATGCACTACAAAAAATATTGGATGATCCAGATGTATTAGAAG
AAATACCTAAATTAAACAAACAAAAACGTAGTACTATAGTAGAATCTATAAGAGAAAATCAAGCGATAGAACGCATCATG
ATAAAGTTAAATGAATTAGGGTTTGGACCTAAACTAGCCATGAGTATTTATCAAACGTATAAAGAAGAAACAATGAACAT
CATAAAACAGTCTCCTTATCGATTAGTTATGGATATAAATGGTATTGGTTTTCAAAGAGCAGACCAAATCGCTGAACAAA
TTGGTATTTCAAAAGACCATAATGAACGTGTTGTGGCGGGTGTGAATTACTATTTAGATCAGCAATCGTTACAAAACGGT
CATACATTTTTACCGATTGATATTTTGATCAATGGTGCATATGAATTATTAAATCATAACCAACCTGAAGTTGTAGCAAA
AGAGCAAATTAATGATGTTATGGTTGAGATGAGTGAAGAAAGTAAAATTATAATAGAAGACAATAATTGTTTCATGCCAT
CTTTATATTACTCAGAAGCTAAAAGTGTTCAAATTATGCATAGATTGTATCAACACCAAGAAGATTTAAAAGAAATTGAA
AAAAGTGATTTACAACTTCATATTGGTGAAATAGAAGACATGAATGACGTTTCTTATGCTGAAGGGCAGAAGAATGCACT
CGAAACAGCCATCAATAATAAAATGATGTTATTAACAGGTGGTCCTGGTACAGGTAAGACGACTGTTATAAGAGGAATAT
GTGAGCTATATTCTGAAATTCATGGCGTTAGTTTGGATTATGATGATTATCAAGAAGGAACTGATTTTCCAATAGTTTTA
GCAGCTCCAACAGGAAGAGCAGCTAAAAGATTAAGTGAATCAACTGGTTTAGAAGCCATGACTATCCATAGATTGATAGG
TTGGAGTAAAGATACTCAACCTGATGATGTATTAGATAATGATATACATGCTCATTTAATTATATTGGATGAAATGTCTA
TGGTTGATACATGGTTAATGTACCAATTTTTAAGAGCAGTACCTGATTATGCGCAAATTATTTTTGTAGGTGATGAAGAT
CAATTACCTTCAGTTGGACCTGGTCAAATATTCAAAGATTTAATTGATTCAAAAGTCATTCCACGTGTGAACTTAACAGA
AGTATATAGGCAACAAGAAGGTTCATCAATCATTGATTTAGCACATAAAATAAAAAATAATATTCCAGTTTCTATTAATG
AAAAACATCATGACCGCTCATTTATCAGTTGTAACAGTAACCAAATTGCTTCAGTCGTTGAAAAAGTTGTTCAAGGTGCA
GTTAAAAAAGGATATAATATGCAAGATATTCAAGTTCTTGCGCCAATATATCGTGGTCCAGCTGGTATCAATAAGTTAAA
TCAATTACTTCAAGACATTTTAAATCCTAAAACTGAAGAAACAAGGTTTTTACAATACGGTGAAGTAGAGTATCGTGAAC
AGGATAAAGTACTACAGCTTATTAATAGACCGGACGATAACGTGTTTAATGGTGATATTGGTGTTGTTATAGGCGTATAT
AAAGCTGAAGAAAATGCTTTAGGGAAAGATGTTATTATCGTTGATTATGAGGGAAATGAAATAACTTACACGAAACAAGA
TTTATCAGAGGTTACACATGCATATTGTTGTTCAATTCATAAATCACAAGGCTCGGAATTTCCGATTGTTATCATGCCTA
TTGTTAGACAATACTTTAGAATGTTACAGAAAAACATTTTATATACTGGTTTAACAAGAGCAAAACAGTCTTTAGTTGTC
TGTGGTGAGGAAAATGCTTTTAATCAAGGTATTAAAACATTAGGAAATGGACGTATGACGTCTTTCGATACAAAACTTAA
ACTGTATTTTAGTAATGATGATACAGAGGAACCAACTGAAATCAAAAATTTGATACTGACAGAAGAAAATATGTATGAAA
TTGATCCAATGATAAACATGCAAAATAAAACACCTTATGACTTCATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

AAA domain (AAA_30)

(339-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.748

100

0.5