Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PYH58_RS07765 Genome accession   NZ_CP118813
Coordinates   1590294..1592684 (-) Length   796 a.a.
NCBI ID   WP_353462149.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 7061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1585294..1597684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH58_RS07745 (PYH58_07745) - 1586331..1586636 (-) 306 WP_025904237.1 DUF1292 domain-containing protein -
  PYH58_RS07750 (PYH58_07750) ruvX 1586656..1587084 (-) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  PYH58_RS07755 (PYH58_07755) - 1587077..1587346 (-) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  PYH58_RS07760 (PYH58_07760) alaS 1587414..1590044 (-) 2631 WP_353462148.1 alanine--tRNA ligase -
  PYH58_RS07765 (PYH58_07765) recD2 1590294..1592684 (-) 2391 WP_353462149.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PYH58_RS07770 (PYH58_07770) - 1592687..1593355 (-) 669 WP_103360765.1 tetratricopeptide repeat protein -
  PYH58_RS07775 (PYH58_07775) mnmA 1593442..1594551 (-) 1110 WP_353462150.1 tRNA 2-thiouridine(34) synthase MnmA -
  PYH58_RS07780 (PYH58_07780) - 1594544..1595686 (-) 1143 WP_353462151.1 cysteine desulfurase family protein -
  PYH58_RS07785 (PYH58_07785) sal(A) 1595746..1597371 (-) 1626 WP_353462152.1 ABC-F type ribosomal protection protein Sal(A) -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90408.60 Da        Isoelectric Point: 4.5956

>NTDB_id=795498 PYH58_RS07765 WP_353462149.1 1590294..1592684(-) (recD2) [Mammaliicoccus sciuri strain 7061]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIADQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVEEDTVSETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=795498 PYH58_RS07765 WP_353462149.1 1590294..1592684(-) (recD2) [Mammaliicoccus sciuri strain 7061]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTTAAAGGTAAAGTGACAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATAGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCCGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACAATTGCAGAATCAATACGTGAAAATCAAGCTATTGAACGTATTATG
ATTAAACTTAATGAACTTGGATTCGGACCTAAACTTGCGATGGCAATTTATCAATTTTATAAAGAAGAAACACTTAATAT
AATTAAACAATCTCCTTATCGTTTAGTGATGGATATAAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCTGATCAAG
TTGGGATTTCTAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAACAATCATTACAGAATGGT
CATACATTTTTACCTGTTGATATTTTGGTCAACGGGGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATAGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGGCTTTATCAACATCAAGATGAGCTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGCCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCTATTAATCACAAAATGATGCTATTAACAGGTGGACCTGGAACAGGTAAGACGACCGTTATTCGAGGTATTT
GTGAGTTGTATTCTGAAATACATGGTGTAAGTTTGAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTGTTA
GCAGCACCGACTGGTCGTGCAGCAAAGCGTTTAAGTGAATCAACTGGACTAGAAGCAATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGACCAGGTCAAATTTTTAAAGATTTGATTGATTCTAAAGTTATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGACTTGGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGATCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTTCAAGGCGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCCCCTATATATCGTGGACCAGCTGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGTGATATTGAATATCGTGAAA
ATGATAAAGTACTACAACTTATTAATCGGCCAGATGATAATGTGTTTAATGGTGATATTGGTGTAGTGACGGGTGTTTAT
AAAGCAGAAGAAAATGCACTCGGTAAAGATGTCGTCATTGTGGATTATGAAGGGAATGACATTACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCCCAAGGGTCGGAATTCCCGATAGTCATTATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAATATTCTATATACCGGACTTACACGTGCGAAACAGTCGCTTGTTGTG
TGTGGTGAAGAGCAAGCCTTTAATCAAGGTATTCAAACGCTAGGTCATGAGAGAATGACTTCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAGAAGATACGGTGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATAGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.876

100

0.504