Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH72_RS13360 Genome accession   NZ_CP118782
Coordinates   2722384..2722890 (-) Length   168 a.a.
NCBI ID   WP_019166018.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7072     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2717384..2727890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH72_RS13345 (PYH72_13320) - 2719417..2720649 (-) 1233 WP_096554402.1 MFS transporter -
  PYH72_RS13350 (PYH72_13325) - 2720886..2721854 (-) 969 WP_096554400.1 Abi family protein -
  PYH72_RS13355 (PYH72_13330) rpsR 2722089..2722331 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  PYH72_RS13360 (PYH72_13335) ssbA 2722384..2722890 (-) 507 WP_019166018.1 single-stranded DNA-binding protein Machinery gene
  PYH72_RS13365 (PYH72_13340) rpsF 2722913..2723209 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  PYH72_RS13370 (PYH72_13345) - 2723552..2725063 (+) 1512 WP_096554398.1 B domain-containing protein -
  PYH72_RS13375 (PYH72_13350) - 2725123..2725932 (-) 810 WP_096554396.1 ABC transporter permease -
  PYH72_RS13380 (PYH72_13355) - 2725925..2726878 (-) 954 WP_353422519.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18724.39 Da        Isoelectric Point: 5.1957

>NTDB_id=795209 PYH72_RS13360 WP_019166018.1 2722384..2722890(-) (ssbA) [Staphylococcus delphini strain 7072]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNNHQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=795209 PYH72_RS13360 WP_019166018.1 2722384..2722890(-) (ssbA) [Staphylococcus delphini strain 7072]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAATTTCTTGTTTAAAGGAAGTCTAGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATAATCATCAACCCGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.363