Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWH35_RS18425 Genome accession   NZ_CP118772
Coordinates   3987194..3987709 (-) Length   171 a.a.
NCBI ID   WP_035269622.1    Uniprot ID   A0AAE9H8A3
Organism   Alcaligenes faecalis strain JF101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3982194..3992709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWH35_RS18395 (PWH35_18395) - 3982242..3982775 (+) 534 WP_250756304.1 Chromate resistance protein ChrB -
  PWH35_RS18400 (PWH35_18400) - 3982759..3983985 (+) 1227 WP_250757271.1 MFS transporter -
  PWH35_RS18405 (PWH35_18405) - 3984026..3984412 (-) 387 WP_009461960.1 RidA family protein -
  PWH35_RS18410 (PWH35_18410) - 3984470..3985444 (-) 975 WP_250756305.1 tripartite tricarboxylate transporter substrate binding protein -
  PWH35_RS18415 (PWH35_18415) - 3985456..3986373 (-) 918 WP_250756306.1 fumarylacetoacetate hydrolase family protein -
  PWH35_RS18420 (PWH35_18420) - 3986388..3987047 (-) 660 WP_009461966.1 GntR family transcriptional regulator -
  PWH35_RS18425 (PWH35_18425) ssb 3987194..3987709 (-) 516 WP_035269622.1 single-stranded DNA-binding protein Machinery gene
  PWH35_RS18430 (PWH35_18430) - 3987969..3989180 (-) 1212 WP_022983677.1 MFS transporter -
  PWH35_RS18435 (PWH35_18435) uvrA 3989292..3992255 (+) 2964 WP_250757272.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18816.84 Da        Isoelectric Point: 5.3412

>NTDB_id=795103 PWH35_RS18425 WP_035269622.1 3987194..3987709(-) (ssb) [Alcaligenes faecalis strain JF101]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMSD
NLADMDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=795103 PWH35_RS18425 WP_035269622.1 3987194..3987709(-) (ssb) [Alcaligenes faecalis strain JF101]
ATGGCATCGGTAAATAAAGTCATTCTGGTGGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCTGGCGAACGCCGTGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATTGCAGGTGAGTACCTGCGCAAAGGCCGTCCCGTCTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGCCAGGACGGTCAGGAGCGTTTCACCACGGAAATCATCGCCGAGCAAATGCAAAT
GCTGGGCGGCCGTGATGGTGGTGATATGGGCGGCGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGCACCTG
CGCCGCAACGGGCTCAGCGTCCAGCGCCTCAACAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCGGAC
AATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.323

100

0.567
  ssb Glaesserella parasuis strain SC1401

48.187

100

0.544
  ssb Neisseria meningitidis MC58

48.066

100

0.509
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.509