Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ORD17_RS04030 Genome accession   NZ_CP118747
Coordinates   773560..774699 (+) Length   379 a.a.
NCBI ID   WP_308389602.1    Uniprot ID   -
Organism   Acidithiobacillus sp. AMEEHan     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 768560..779699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORD17_RS04015 - 769442..770296 (+) 855 WP_308389599.1 shikimate dehydrogenase -
  ORD17_RS04020 pilB 770272..771972 (+) 1701 WP_308389600.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ORD17_RS04025 - 772010..773563 (+) 1554 WP_308389601.1 ATP-binding protein -
  ORD17_RS04030 pilR 773560..774699 (+) 1140 WP_308389602.1 sigma-54 dependent transcriptional regulator Regulator
  ORD17_RS04035 - 774741..774923 (+) 183 WP_308389603.1 hypothetical protein -
  ORD17_RS04040 - 774907..775710 (+) 804 WP_308389604.1 prepilin peptidase -
  ORD17_RS04045 coaE 775707..776303 (+) 597 WP_308389605.1 dephospho-CoA kinase -
  ORD17_RS04050 zapD 776367..777116 (+) 750 WP_308389606.1 cell division protein ZapD -
  ORD17_RS04055 - 777140..778144 (+) 1005 WP_308389607.1 class 1 fructose-bisphosphatase -
  ORD17_RS04060 - 778214..779218 (-) 1005 WP_308389608.1 hypothetical protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41452.59 Da        Isoelectric Point: 7.8412

>NTDB_id=794961 ORD17_RS04030 WP_308389602.1 773560..774699(+) (pilR) [Acidithiobacillus sp. AMEEHan]
MNEKAASWALVLDDEQTITELLDITLTEMGFSVQVAHSLRSAREALELHSYALCLTDLRLPDGSGLDFVRHIHRHAPQVP
VAVITAYSSTEGAVEAMQAGAFDFMTKPIDLKRLRRLVEQARALAVLEPDGSDSGSERLVGDSEPMRALRQQIRLLARSN
APVFLSGESGTGKELSARAIHDAGPRRDKPFIAVNCAAIPEGLLESELFGSEKGAFTGANQKREGLFLAADGGTLFLDEI
GDVPMAMQVKLLRALQERSIRPIGASSEIPVDIRLISATHRNLQEMVHAGTFRADLYYRIHVVPLQIPPLRQRQGDIPLL
VTALLRKIAQRQGKTLPGIEASALHWLAQQSFPGTCANWKTSSNAPSPSIPVRKSRCRI

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=794961 ORD17_RS04030 WP_308389602.1 773560..774699(+) (pilR) [Acidithiobacillus sp. AMEEHan]
ATGAATGAGAAGGCCGCTTCCTGGGCACTGGTCCTGGATGATGAACAGACGATTACGGAATTGCTCGATATCACCCTCAC
GGAGATGGGCTTCTCGGTACAAGTTGCGCACAGTCTACGCAGCGCACGCGAAGCCCTGGAACTGCACAGCTACGCATTGT
GCCTGACCGACCTGCGCCTACCGGACGGCAGTGGGCTGGACTTTGTCCGCCATATCCACCGCCATGCGCCGCAAGTTCCA
GTTGCCGTCATCACCGCCTACTCGTCAACAGAGGGTGCGGTGGAGGCAATGCAGGCCGGCGCCTTCGACTTCATGACCAA
ACCCATCGACCTCAAACGGCTGCGCCGACTGGTCGAGCAGGCGCGGGCGCTGGCCGTGCTGGAGCCCGATGGATCGGACA
GTGGTAGCGAGCGCCTGGTGGGTGACAGCGAGCCGATGCGCGCCTTGCGCCAGCAGATCCGACTCTTGGCGCGCAGTAAC
GCGCCGGTCTTTCTCTCGGGTGAATCGGGCACCGGCAAGGAGCTCAGCGCCCGTGCCATACACGACGCAGGACCACGTCG
TGACAAGCCCTTCATTGCGGTGAACTGCGCGGCCATTCCGGAAGGACTGCTGGAAAGTGAACTGTTCGGGAGCGAGAAAG
GGGCATTCACCGGCGCCAACCAGAAGCGCGAAGGCCTCTTTCTCGCCGCTGATGGTGGCACCCTGTTTCTCGACGAAATC
GGCGATGTCCCCATGGCGATGCAAGTCAAACTGCTACGCGCGTTGCAGGAACGCAGTATTCGACCGATCGGCGCGAGCAG
CGAAATTCCCGTCGATATCCGCCTGATCAGCGCTACCCACCGGAATCTGCAAGAGATGGTCCATGCCGGCACATTCCGGG
CGGACCTCTACTATCGCATCCATGTGGTACCCTTGCAGATTCCCCCTCTGCGGCAGCGCCAGGGCGACATACCCCTGCTC
GTCACCGCTCTGTTACGCAAAATCGCCCAACGTCAGGGGAAGACCCTGCCGGGCATCGAAGCGAGCGCTCTTCACTGGCT
CGCGCAGCAATCCTTCCCGGGAACGTGCGCGAACTGGAAAACCTCCTCGAACGCGCCTTCGCCCTCCATACCGGTCCGGA
AATCACGCTGCAGGATCTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(10-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.868

92.084

0.496
  pilR Acinetobacter baumannii strain A118

46.571

92.348

0.43
  luxO Vibrio cholerae strain A1552

41.379

91.821

0.38