Detailed information NTG0794794

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QFX61_RS05670
• Genome accession: NZ_CP132029
• Coordinates: 1084983..1085987 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005768.1
• Uniprot ID: P66757
• Organism: Staphylococcus aureus strain 2.4b
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1079983..1090987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFX61_RS05635	mreD	1080468..1080998 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
QFX61_RS05640	rplU	1081291..1081599 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
QFX61_RS05645	-	1081605..1081925 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
QFX61_RS05650	rpmA	1081937..1082221 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
QFX61_RS05655	obgE	1082575..1083867 (+)	1293	WP_000496100.1	GTPase ObgE	-
QFX61_RS05660	-	1083880..1084335 (+)	456	WP_000368902.1	ACT domain-containing protein	-
QFX61_RS05665	ruvA	1084349..1084951 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
QFX61_RS05670	ruvB	1084983..1085987 (+)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QFX61_RS05675	queA	1085989..1087014 (+)	1026	WP_001019167.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
QFX61_RS05680	tgt	1087037..1088176 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
QFX61_RS05685	yajC	1088195..1088455 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37645.94 Da
• Isoelectric Point: 5.1876

>NTDB_id=794794 QFX61_RS05670 WP_001005768.1 1084983..1085987(+) (ruvB) [Staphylococcus aureus strain 2.4b]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide

• Length: 1005 bp

>NTDB_id=794794 QFX61_RS05670 WP_001005768.1 1084983..1085987(+) (ruvB) [Staphylococcus aureus strain 2.4b]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: P66757

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515