Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PW252_RS09410 Genome accession   NZ_CP118735
Coordinates   1932984..1933478 (-) Length   164 a.a.
NCBI ID   WP_044754145.1    Uniprot ID   A0A0Z8JXL2
Organism   Streptococcus iners strain 29887     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1927984..1938478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW252_RS09390 (PW252_09395) - 1930554..1931498 (+) 945 WP_105144952.1 magnesium transporter CorA family protein -
  PW252_RS09395 (PW252_09400) - 1931514..1932170 (+) 657 WP_248049860.1 DUF1129 domain-containing protein -
  PW252_RS09400 (PW252_09405) - 1932214..1932480 (-) 267 WP_316716725.1 hypothetical protein -
  PW252_RS09405 (PW252_09410) rpsR 1932713..1932952 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  PW252_RS09410 (PW252_09415) ssb 1932984..1933478 (-) 495 WP_044754145.1 single-stranded DNA-binding protein Machinery gene
  PW252_RS09415 (PW252_09420) rpsF 1933490..1933780 (-) 291 WP_024418487.1 30S ribosomal protein S6 -
  PW252_RS09420 (PW252_09425) - 1933952..1934941 (-) 990 WP_248033733.1 lipoate--protein ligase -
  PW252_RS09425 (PW252_09430) - 1935228..1935611 (-) 384 WP_105095601.1 VOC family protein -
  PW252_RS09430 (PW252_09435) lpdA 1935707..1937467 (-) 1761 WP_024399590.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18130.92 Da        Isoelectric Point: 4.7187

>NTDB_id=794750 PW252_RS09410 WP_044754145.1 1932984..1933478(-) (ssb) [Streptococcus iners strain 29887]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVLADSFQLLESRTAREGQGGAYSAGNSFAAGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=794750 PW252_RS09410 WP_044754145.1 1932984..1933478(-) (ssb) [Streptococcus iners strain 29887]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACTCTAGCAGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATCCAGACTCGT
AGCTATGATAACCAGCAGGGACAACGTGTCTACGTGACTGAGGTGCTTGCGGATAGTTTCCAACTCTTGGAAAGCCGTAC
TGCTCGTGAAGGTCAAGGTGGTGCTTATTCAGCTGGTAATTCATTTGCCGCTGGGAATGACTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCTAACTTCGCTAGAGAAGAAAGTCCATTTGGAGCTAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JXL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.463

0.372