Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PW220_RS01785 Genome accession   NZ_CP118734
Coordinates   333792..334286 (+) Length   164 a.a.
NCBI ID   WP_044754145.1    Uniprot ID   A0A0Z8JXL2
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328792..339286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS01765 (PW220_01765) lpdA 329803..331563 (+) 1761 WP_248054927.1 dihydrolipoyl dehydrogenase -
  PW220_RS01770 (PW220_01770) - 331659..332042 (+) 384 WP_105095601.1 VOC family protein -
  PW220_RS01775 (PW220_01775) - 332329..333318 (+) 990 WP_248033733.1 lipoate--protein ligase -
  PW220_RS01780 (PW220_01780) rpsF 333490..333780 (+) 291 WP_024418487.1 30S ribosomal protein S6 -
  PW220_RS01785 (PW220_01785) ssb 333792..334286 (+) 495 WP_044754145.1 single-stranded DNA-binding protein Machinery gene
  PW220_RS01790 (PW220_01790) rpsR 334318..334557 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  PW220_RS01795 (PW220_01795) - 334766..335422 (-) 657 WP_248054926.1 DUF1129 domain-containing protein -
  PW220_RS01800 (PW220_01800) - 335438..336382 (-) 945 WP_105118273.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18130.92 Da        Isoelectric Point: 4.7187

>NTDB_id=794676 PW220_RS01785 WP_044754145.1 333792..334286(+) (ssb) [Streptococcus iners subsp. hyiners strain 29892]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVLADSFQLLESRTAREGQGGAYSAGNSFAAGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=794676 PW220_RS01785 WP_044754145.1 333792..334286(+) (ssb) [Streptococcus iners subsp. hyiners strain 29892]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACTCTAGCAGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AGCTATGATAACCAGCAGGGACAACGTGTCTACGTGACTGAGGTGCTTGCGGATAGTTTCCAACTCTTGGAAAGCCGTAC
TGCTCGTGAAGGTCAAGGTGGTGCTTATTCAGCTGGTAATTCATTTGCCGCTGGGAATGACTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCTAACTTCGCTAGAGAAGAAAGTCCATTTGGAGCTAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JXL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.463

0.372