Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PW220_RS00775 Genome accession   NZ_CP118734
Coordinates   127294..128247 (+) Length   317 a.a.
NCBI ID   WP_248055950.1    Uniprot ID   A0AA96VIN3
Organism   Streptococcus iners subsp. hyiners strain 29892     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122294..133247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PW220_RS00755 (PW220_00755) - 122438..123721 (+) 1284 WP_248055946.1 LTA synthase family protein -
  PW220_RS00760 (PW220_00760) - 123794..125098 (+) 1305 WP_248055947.1 hypothetical protein -
  PW220_RS00765 (PW220_00765) - 125278..125520 (+) 243 WP_248055948.1 hypothetical protein -
  PW220_RS00770 (PW220_00770) - 125948..127171 (+) 1224 WP_248055949.1 hypothetical protein -
  PW220_RS00775 (PW220_00775) comYH 127294..128247 (+) 954 WP_248055950.1 class I SAM-dependent methyltransferase Machinery gene
  PW220_RS00780 (PW220_00780) - 128297..129484 (+) 1188 WP_024388903.1 acetate kinase -
  PW220_RS00785 (PW220_00785) - 129742..130293 (+) 552 WP_248055951.1 folate family ECF transporter S component -
  PW220_RS00790 (PW220_00790) - 130347..131603 (+) 1257 WP_248055952.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  PW220_RS00795 (PW220_00795) pepA 131648..132709 (-) 1062 WP_248055953.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35712.88 Da        Isoelectric Point: 4.5112

>NTDB_id=794669 PW220_RS00775 WP_248055950.1 127294..128247(+) (comYH) [Streptococcus iners subsp. hyiners strain 29892]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQTLHDLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLLATQKVTVLEIGSGTGNLAQTILNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQVILADLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAIMLAPNDLLTSPQ
SDLLKGWLQAEANIVAMIALPPSLFGKAAMAKSIFVLQKKAARPLVPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=794669 PW220_RS00775 WP_248055950.1 127294..128247(+) (comYH) [Streptococcus iners subsp. hyiners strain 29892]
ATGAATTTTGAGAAGATTGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGTTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAACGCAGCCTATCTAGCTGGTCAGCACGACACGGATTTGATTGTCCGCAACAATC
AAACCTTACACGACTTGCACTTGACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTGCTTATCAAGGCCAACCAGACC
GAGCCAATGCAGTACAATCACCAGTTTACGCCAGACTCTATCGGCTTTATCCTGTCATTTCTAGTGGATCAGTTGCTGGC
TACTCAAAAGGTAACAGTCTTGGAGATTGGCTCGGGGACAGGGAACCTGGCGCAGACCATCCTTAATGCCAGCCAGAAAG
ACTTGGATTACTTGGGGATTGAAGTAGATGATCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTTATGCAGGCAGAG
ATTTCTTTTGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAGTCATTCTTGCGGATTTACCAATCGG
GTACTATCCAGATGACCAGATTGCCAGTCGCTATCAGGTAGCGAGCCAGACAGAGCATACCTACGCCCACCATCTACTCA
TGGAACAGTCCCTCAAGTATCTTGAAAAAGATGGGTTTGCGATTATGCTGGCTCCAAATGATCTTTTAACCAGTCCACAG
AGCGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATATCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGCAA
AGCAGCCATGGCCAAGTCAATTTTTGTCTTGCAGAAGAAAGCCGCTAGACCGCTAGTACCATTTGTCTATCCCTTGCAGA
GTTTGCAAGAACCAGAAGCTATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599