Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   PXH68_RS07025 Genome accession   NZ_CP118733
Coordinates   1541772..1542416 (+) Length   214 a.a.
NCBI ID   WP_248028573.1    Uniprot ID   -
Organism   Streptococcus suivaginalis strain 29896     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536772..1547416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXH68_RS07000 (PXH68_07000) - 1537458..1538237 (+) 780 WP_248027760.1 ABC transporter ATP-binding protein -
  PXH68_RS07010 (PXH68_07010) - 1539678..1540250 (-) 573 WP_248028572.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  PXH68_RS07015 (PXH68_07015) - 1540260..1540778 (-) 519 WP_024419426.1 TetR/AcrR family transcriptional regulator -
  PXH68_RS07020 (PXH68_07020) - 1540900..1541718 (+) 819 WP_203181306.1 cation diffusion facilitator family transporter -
  PXH68_RS07025 (PXH68_07025) cclA/cilC 1541772..1542416 (+) 645 WP_248028573.1 prepilin peptidase Machinery gene
  PXH68_RS07030 (PXH68_07030) - 1542470..1543930 (+) 1461 WP_248028574.1 nicotinate phosphoribosyltransferase -
  PXH68_RS07035 (PXH68_07035) nadE 1543943..1544767 (+) 825 WP_248028575.1 ammonia-dependent NAD(+) synthetase -
  PXH68_RS07040 (PXH68_07040) - 1544809..1545342 (-) 534 WP_248028576.1 VanZ family protein -
  PXH68_RS07045 (PXH68_07045) rlmN 1545339..1546451 (-) 1113 WP_248028577.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  PXH68_RS07050 (PXH68_07050) - 1546458..1547138 (-) 681 WP_205031561.1 YutD family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24217.27 Da        Isoelectric Point: 8.7032

>NTDB_id=794642 PXH68_RS07025 WP_248028573.1 1541772..1542416(+) (cclA/cilC) [Streptococcus suivaginalis strain 29896]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LLVLLCHFQILSLAQTILILAGLVLAIYDIKHQEYPFAVWLVFTFIALILSQLNWLFCGLLVLAYLTEKWQLNIGSGDFL
YLASLSLLFGVTEILWIIQISSILGLAVFWVFTPKSLPYVPFLFLASLIITITF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=794642 PXH68_RS07025 WP_248028573.1 1541772..1542416(+) (cclA/cilC) [Streptococcus suivaginalis strain 29896]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTCATACCAATCCTGTCCC
AGCTTTCCACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTGGAGTTCTTAGCTGGC
CTATTGGTCCTGCTCTGCCATTTTCAAATTCTATCTCTTGCCCAAACCATTCTCATTTTGGCAGGACTAGTTTTGGCCAT
TTACGACATCAAACATCAGGAATATCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGATACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCCTTTTGGTCCTAGCCTATCTGACTGAAAAATGGCAACTCAATATTGGTTCTGGCGATTTTCTC
TATCTGGCAAGTCTCTCCCTTTTGTTTGGCGTGACCGAAATCCTCTGGATTATCCAGATTAGTTCCATCTTAGGACTGGC
AGTCTTTTGGGTCTTTACACCAAAATCTCTACCTTATGTACCTTTTCTTTTTTTGGCCAGTCTCATCATCACTATTACCT
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.237

98.598

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

50.244

95.794

0.481
  cclA/cilC Streptococcus pneumoniae D39

50.244

95.794

0.481
  cclA/cilC Streptococcus pneumoniae R6

50.244

95.794

0.481
  cclA/cilC Streptococcus mitis NCTC 12261

48.341

98.598

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

49.268

95.794

0.472