NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PWO56_RS01975	Genome accession	NZ_CP118699
Coordinates	408342..409214 (-)	Length	290 a.a.
NCBI ID	WP_077095240.1	Uniprot ID	A0AAX3P7A8
Organism	Aeromonas hydrophila strain K522
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 403342..414214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWO56_RS01950 (PWO56_01950)	-	405078..406262 (+)	1185	WP_077095243.1	tetratricopeptide repeat protein	-
PWO56_RS01955 (PWO56_01955)	mutT	406271..406684 (+)	414	WP_179101298.1	8-oxo-dGTP diphosphatase MutT	-
PWO56_RS01960 (PWO56_01960)	yacG	406745..406939 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
PWO56_RS01965 (PWO56_01965)	zapD	406949..407671 (-)	723	WP_024945431.1	cell division protein ZapD	-
PWO56_RS01970 (PWO56_01970)	coaE	407709..408323 (-)	615	WP_077095241.1	dephospho-CoA kinase	-
PWO56_RS01975 (PWO56_01975)	pilD	408342..409214 (-)	873	WP_077095240.1	A24 family peptidase	Machinery gene
PWO56_RS01980 (PWO56_01980)	pilC	409237..410478 (-)	1242	WP_043126919.1	type II secretion system F family protein	Machinery gene
PWO56_RS01985 (PWO56_01985)	pilB	410594..412300 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
PWO56_RS01990 (PWO56_01990)	-	412304..412744 (-)	441	WP_077095239.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PWO56_RS01995 (PWO56_01995)	nadC	413067..413924 (-)	858	WP_077095238.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32438.68 Da Isoelectric Point: 6.7410

                                >NTDB_id=794442 PWO56_RS01975 WP_077095240.1 408342..409214(-) (pilD) [Aeromonas hydrophila strain K522]

MLLITDVFHSLPWLYFSLVFLFSLVIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA

ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTSLLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL

VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=794442 PWO56_RS01975 WP_077095240.1 408342..409214(-) (pilD) [Aeromonas hydrophila strain K522]

ATGTTGCTGATCACTGACGTTTTCCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCCCTGGTGATCGG

CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA

ATCCGGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC

ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC

GGCCCGTTATCCTCTGGTGGAACTGCTGACATCCCTGCTCTCGCTGGTCGTCGCCGCGACATTTGCACCGGGCTGGGGCT

TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG

CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAATCTGACAGGGGGATTTGCACCGCTGGCCGATGCGGTGATCGG

CGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTATTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGGTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCGTCGCTG

GTTGGCGCTTTCATCGGTATTGGTCTCATCCTGCTGCGCAATCATCATCAGAACAAACCCATCCCCTTTGGCCCCTATCT

GGCCATCGCCGGCTGGATTGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459

Detailed information NTG0794442