Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LV564_RS11520 Genome accession   NZ_CP118675
Coordinates   2230823..2231359 (+) Length   178 a.a.
NCBI ID   WP_078526393.1    Uniprot ID   -
Organism   Komagataeibacter nataicola strain DS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2225823..2236359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV564_RS11505 (LV564_11515) speE 2225888..2226748 (-) 861 WP_078526397.1 polyamine aminopropyltransferase -
  LV564_RS11510 (LV564_11520) speD 2226882..2227346 (-) 465 WP_025437442.1 adenosylmethionine decarboxylase -
  LV564_RS11515 (LV564_11525) uvrA 2227506..2230553 (-) 3048 WP_078526395.1 excinuclease ABC subunit UvrA -
  LV564_RS11520 (LV564_11530) ssb 2230823..2231359 (+) 537 WP_078526393.1 single-stranded DNA-binding protein Machinery gene
  LV564_RS11525 (LV564_11535) gyrA 2231522..2234308 (+) 2787 WP_078526391.1 DNA gyrase subunit A -
  LV564_RS11530 (LV564_11540) coaD 2234301..2234813 (+) 513 WP_078526389.1 pantetheine-phosphate adenylyltransferase -
  LV564_RS11535 (LV564_11545) - 2234878..2235369 (+) 492 WP_078526387.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19029.80 Da        Isoelectric Point: 5.3670

>NTDB_id=794282 LV564_RS11520 WP_078526393.1 2230823..2231359(+) (ssb) [Komagataeibacter nataicola strain DS12]
MAGSVNKVILVGNLGKDPEVRNSQSGAKIVSLTLATSDTWNDRASGERRERTEWHRVVIFNERLGDVAERFLRKGRKVYL
EGTLQTRKWTDQSGQDRYTTEVVIDRFRGELVLLDSNRGGDSGGGDDMGGGYGGGGGGGYSAPARSSQPQRNERPAGGGG
GGWDAPAGGSDLDDEIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=794282 LV564_RS11520 WP_078526393.1 2230823..2231359(+) (ssb) [Komagataeibacter nataicola strain DS12]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGGAACAGCCAGAGCGGGGC
GAAGATCGTCTCGCTTACCCTGGCCACGAGCGATACATGGAATGACCGCGCTTCGGGCGAGCGGCGCGAGCGCACCGAAT
GGCACCGGGTCGTCATCTTCAACGAGCGCCTTGGCGATGTGGCCGAGCGCTTCCTGCGCAAGGGCCGCAAGGTCTATCTC
GAAGGCACGCTGCAGACACGCAAATGGACCGACCAGAGCGGCCAGGACCGCTACACCACCGAGGTGGTGATCGACCGCTT
CCGTGGCGAGCTGGTGCTGCTTGACAGCAACCGCGGCGGTGATTCGGGCGGTGGCGACGACATGGGCGGCGGCTATGGCG
GCGGTGGTGGTGGCGGCTACAGCGCGCCCGCGCGCAGCAGCCAGCCCCAGCGCAACGAGCGCCCCGCCGGTGGCGGTGGC
GGCGGATGGGATGCCCCCGCCGGTGGCAGCGACCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.483
  ssb Vibrio cholerae strain A1552

47.159

98.876

0.466
  ssb Neisseria meningitidis MC58

39.674

100

0.41
  ssb Neisseria gonorrhoeae MS11

39.227

100

0.399