Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSR64_RS00040 Genome accession   NZ_CP118670
Coordinates   9328..9855 (+) Length   175 a.a.
NCBI ID   WP_002833866.1    Uniprot ID   A0A0R2H8I2
Organism   Pediococcus pentosaceus strain SM2D17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4328..14855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR64_RS00030 (PSR64_00030) gyrA 6281..8761 (+) 2481 WP_375378202.1 DNA gyrase subunit A -
  PSR64_RS00035 (PSR64_00035) rpsF 9008..9292 (+) 285 WP_002833865.1 30S ribosomal protein S6 -
  PSR64_RS00040 (PSR64_00040) ssb 9328..9855 (+) 528 WP_002833866.1 single-stranded DNA-binding protein Machinery gene
  PSR64_RS00045 (PSR64_00045) rpsR 9879..10115 (+) 237 WP_002833867.1 30S ribosomal protein S18 -
  PSR64_RS00050 (PSR64_00050) - 10318..12318 (+) 2001 WP_115154444.1 DHH family phosphoesterase -
  PSR64_RS00055 (PSR64_00055) rplI 12324..12776 (+) 453 WP_023439730.1 50S ribosomal protein L9 -
  PSR64_RS00060 (PSR64_00060) dnaB 12825..14222 (+) 1398 WP_002833870.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19144.68 Da        Isoelectric Point: 4.7512

>NTDB_id=794256 PSR64_RS00040 WP_002833866.1 9328..9855(+) (ssb) [Pediococcus pentosaceus strain SM2D17]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=794256 PSR64_RS00040 WP_002833866.1 9328..9855(+) (ssb) [Pediococcus pentosaceus strain SM2D17]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAGGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2H8I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.582

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.623
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36