Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   IGS56_RS08775 Genome accession   NZ_AP022846
Coordinates   1793566..1793913 (-) Length   115 a.a.
NCBI ID   WP_071163149.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788566..1798913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS08750 (JPHIA_16770) otnI 1789033..1789809 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  IGS56_RS08755 (JPHIA_16780) otnC 1789812..1790444 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  IGS56_RS08760 (JPHIA_16790) otnK 1790441..1791682 (-) 1242 WP_071163151.1 3-oxo-tetronate kinase -
  IGS56_RS08765 (JPHIA_16800) ltnD 1791685..1792590 (-) 906 WP_005665973.1 L-threonate dehydrogenase -
  IGS56_RS08770 (JPHIA_16810) - 1792761..1793519 (+) 759 WP_071163150.1 DeoR/GlpR family DNA-binding transcription regulator -
  IGS56_RS08775 (JPHIA_16820) comE1/comEA 1793566..1793913 (-) 348 WP_071163149.1 helix-hairpin-helix domain-containing protein Machinery gene
  IGS56_RS08780 (JPHIA_16830) ispH 1794082..1795026 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IGS56_RS08785 (JPHIA_16840) lspA 1795023..1795538 (-) 516 WP_071163148.1 signal peptidase II -
  IGS56_RS08790 (JPHIA_16850) - 1795608..1797167 (-) 1560 WP_071163147.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12337.13 Da        Isoelectric Point: 8.0085

>NTDB_id=79425 IGS56_RS08775 WP_071163149.1 1793566..1793913(-) (comE1/comEA) [Haemophilus influenzae strain TAMBA230]
MKLIKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=79425 IGS56_RS08775 WP_071163149.1 1793566..1793913(-) (comE1/comEA) [Haemophilus influenzae strain TAMBA230]
ATGAAATTAATAAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

97.321

97.391

0.948
  comEA/comE1 Glaesserella parasuis strain SC1401

58.716

94.783

0.557
  comEA Vibrio cholerae C6706

41.593

98.261

0.409
  comEA Vibrio cholerae strain A1552

41.593

98.261

0.409

Multiple sequence alignment