Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PWG09_RS08615 Genome accession   NZ_CP118634
Coordinates   1738935..1739438 (-) Length   167 a.a.
NCBI ID   WP_409018593.1    Uniprot ID   -
Organism   Brevundimonas vesicularis strain PY2210     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1733935..1744438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWG09_RS08600 (PWG09_08565) - 1736628..1737236 (+) 609 WP_409018590.1 superoxide dismutase family protein -
  PWG09_RS08605 (PWG09_08570) - 1737252..1738151 (-) 900 WP_409018591.1 DMT family transporter -
  PWG09_RS08610 (PWG09_08575) - 1738288..1738839 (+) 552 WP_409018592.1 nucleoside 2-deoxyribosyltransferase domain-containing protein -
  PWG09_RS08615 (PWG09_08580) ssb 1738935..1739438 (-) 504 WP_409018593.1 single-stranded DNA-binding protein Machinery gene
  PWG09_RS08620 (PWG09_08585) - 1739534..1739962 (-) 429 WP_409018594.1 hypothetical protein -
  PWG09_RS08625 (PWG09_08590) - 1739959..1740645 (-) 687 WP_409018595.1 hypothetical protein -
  PWG09_RS08630 (PWG09_08595) - 1740750..1743368 (-) 2619 WP_409018596.1 transcriptional regulator -
  PWG09_RS08635 (PWG09_08600) - 1743563..1744390 (-) 828 WP_409018597.1 flagellin -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18066.94 Da        Isoelectric Point: 5.9614

>NTDB_id=794149 PWG09_RS08615 WP_409018593.1 1738935..1739438(-) (ssb) [Brevundimonas vesicularis strain PY2210]
MAGSVNKVILIGNLGRDPEIRTLNSGDRVANLRIATSEQWRDKATGERKEKTEWHQVVIFNENIVKVAENYLKKGSTVYI
EGSLQTRKYTDAQGVEKYSTEIVLQRFNGQLTMLGGRAEGGSGGGYGGGQLGGGRGDDDYSSGFSTGGANRPSGPKESYD
LNDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=794149 PWG09_RS08615 WP_409018593.1 1738935..1739438(-) (ssb) [Brevundimonas vesicularis strain PY2210]
ATGGCCGGTAGCGTCAACAAGGTCATCCTCATCGGCAATTTGGGCCGTGACCCGGAAATCCGCACGCTGAACAGCGGCGA
TCGCGTTGCCAACCTGCGCATCGCCACCTCGGAACAATGGCGCGACAAGGCCACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCAGGTTGTCATCTTCAACGAGAACATCGTCAAGGTGGCTGAAAACTACCTGAAAAAGGGCTCCACGGTTTATATC
GAGGGCTCGCTGCAGACCCGCAAGTACACTGATGCCCAGGGCGTCGAGAAGTATTCGACCGAGATCGTCCTGCAACGCTT
CAATGGCCAGCTGACCATGCTGGGCGGTCGTGCTGAAGGTGGTTCAGGCGGCGGCTATGGCGGCGGTCAATTGGGCGGCG
GTCGCGGCGATGACGACTACTCCTCGGGTTTCTCGACCGGCGGTGCCAACCGTCCCTCGGGTCCCAAGGAATCCTACGAC
CTGAACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.289

100

0.521
  ssb Glaesserella parasuis strain SC1401

44.503

100

0.509
  ssb Neisseria meningitidis MC58

38.462

100

0.419
  ssb Neisseria gonorrhoeae MS11

38.462

100

0.419