Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Herbaro_RS18520 Genome accession   NZ_CP118632
Coordinates   4102425..4102958 (-) Length   177 a.a.
NCBI ID   WP_275011077.1    Uniprot ID   -
Organism   Herbaspirillum sp. WKF16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4097425..4107958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Herbaro_RS18490 (Herbaro_18490) - 4097535..4098599 (+) 1065 WP_275011072.1 type II asparaginase -
  Herbaro_RS18495 (Herbaro_18495) - 4098692..4099267 (-) 576 WP_275011073.1 TMEM165/GDT1 family protein -
  Herbaro_RS18500 (Herbaro_18500) - 4099659..4101281 (+) 1623 WP_275011074.1 glucan biosynthesis protein D -
  Herbaro_RS18510 (Herbaro_18510) - 4101616..4101864 (+) 249 WP_275011075.1 hypothetical protein -
  Herbaro_RS18515 (Herbaro_18515) - 4101887..4102348 (+) 462 WP_275011076.1 DUF1810 domain-containing protein -
  Herbaro_RS18520 (Herbaro_18520) ssb 4102425..4102958 (-) 534 WP_275011077.1 single-stranded DNA-binding protein Machinery gene
  Herbaro_RS18525 (Herbaro_18525) - 4102978..4104174 (-) 1197 WP_275011078.1 MFS transporter -
  Herbaro_RS18530 (Herbaro_18530) - 4104677..4106428 (+) 1752 WP_275011079.1 glycosyl transferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18674.63 Da        Isoelectric Point: 7.0170

>NTDB_id=794120 Herbaro_RS18520 WP_275011077.1 4102425..4102958(-) (ssb) [Herbaspirillum sp. WKF16]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYVEG
RLQTRKWQDKDGVERYTTEIIADTMQMLGSRQGGGGGGGSMEEGSYGGGGGGGYGGGAPRQNAGGGGGGGAAGGAPRQQP
AQRPAPNFSDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=794120 Herbaro_RS18520 WP_275011077.1 4102425..4102958(-) (ssb) [Herbaspirillum sp. WKF16]
ATGGCATCGGTCAATAAAGTCATCATCGTCGGCAACCTCGGACGCGATCCGGAAACGCGCTACATGCCGAACGGCGAAGC
GGTCACCAACATCGCCGTCGCCACGACCGAAAGCTGGAAGGACAAGAACAGCGGCGAAAAGAAGGAGCTTACCGAATGGC
ACCGCATCACCTTCTACCGCAAGCTGGCTGAGATCGCCGGCCAGTATCTGAAGAAAGGCTCGCAGATCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTGGCAAGACAAGGACGGCGTCGAGCGCTACACCACCGAAATCATCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGTGGCGGTGGCGGCGGCGGTTCGATGGAAGAGGGCAGCTACGGCGGTGGCGGCGGTGGTGGCT
ACGGCGGCGGCGCTCCGCGCCAGAACGCCGGTGGTGGCGGTGGCGGTGGCGCCGCTGGCGGCGCTCCGCGCCAGCAGCCG
GCCCAGCGCCCGGCGCCGAACTTCTCGGACATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.301

100

0.571
  ssb Vibrio cholerae strain A1552

50.769

100

0.559
  ssb Neisseria meningitidis MC58

53.977

99.435

0.537
  ssb Neisseria gonorrhoeae MS11

53.409

99.435

0.531