Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | IGS56_RS02955 | Genome accession | NZ_AP022846 |
| Coordinates | 594532..594945 (+) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain TAMBA230 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 589532..599945
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGS56_RS02935 (JPHIA_05590) | - | 590021..592615 (-) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
| IGS56_RS02940 (JPHIA_05600) | comA | 592713..593510 (+) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| IGS56_RS02945 (JPHIA_05610) | comB | 593511..594017 (+) | 507 | WP_071162873.1 | competence protein ComB | Machinery gene |
| IGS56_RS02950 (JPHIA_05620) | comC | 594014..594535 (+) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| IGS56_RS02955 (JPHIA_05630) | comD | 594532..594945 (+) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| IGS56_RS02960 (JPHIA_05640) | comE | 594955..596292 (+) | 1338 | WP_071162872.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| IGS56_RS02965 (JPHIA_05650) | - | 596305..596991 (+) | 687 | WP_071162871.1 | ComF family protein | - |
| IGS56_RS02970 (JPHIA_05660) | nfuA | 597067..597663 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| IGS56_RS02975 (JPHIA_05670) | nudC | 597731..598525 (+) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
| IGS56_RS02980 (JPHIA_05680) | - | 598561..599151 (+) | 591 | WP_071162869.1 | YjaG family protein | - |
| IGS56_RS02985 (JPHIA_05690) | - | 599291..599563 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=79409 IGS56_RS02955 WP_005693727.1 594532..594945(+) (comD) [Haemophilus influenzae strain TAMBA230]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=79409 IGS56_RS02955 WP_005693727.1 594532..594945(+) (comD) [Haemophilus influenzae strain TAMBA230]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |