Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IGS56_RS02940 Genome accession   NZ_AP022846
Coordinates   592713..593510 (+) Length   265 a.a.
NCBI ID   WP_071162874.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587713..598510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS02920 (JPHIA_05560) recR 587886..588488 (-) 603 WP_005626527.1 recombination mediator RecR -
  IGS56_RS02925 (JPHIA_05570) - 588621..588950 (-) 330 WP_071162877.1 YbaB/EbfC family nucleoid-associated protein -
  IGS56_RS02930 (JPHIA_05580) - 589103..589948 (-) 846 WP_190811818.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  IGS56_RS02935 (JPHIA_05590) - 590021..592615 (-) 2595 WP_071162875.1 penicillin-binding protein 1A -
  IGS56_RS02940 (JPHIA_05600) comA 592713..593510 (+) 798 WP_071162874.1 competence protein ComA Machinery gene
  IGS56_RS02945 (JPHIA_05610) comB 593511..594017 (+) 507 WP_071162873.1 competence protein ComB Machinery gene
  IGS56_RS02950 (JPHIA_05620) comC 594014..594535 (+) 522 WP_048951462.1 competence protein ComC Machinery gene
  IGS56_RS02955 (JPHIA_05630) comD 594532..594945 (+) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  IGS56_RS02960 (JPHIA_05640) comE 594955..596292 (+) 1338 WP_071162872.1 type IV pilus secretin PilQ family protein Machinery gene
  IGS56_RS02965 (JPHIA_05650) - 596305..596991 (+) 687 WP_071162871.1 ComF family protein -
  IGS56_RS02970 (JPHIA_05660) nfuA 597067..597663 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31527.87 Da        Isoelectric Point: 5.9495

>NTDB_id=79406 IGS56_RS02940 WP_071162874.1 592713..593510(+) (comA) [Haemophilus influenzae strain TAMBA230]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=79406 IGS56_RS02940 WP_071162874.1 592713..593510(+) (comA) [Haemophilus influenzae strain TAMBA230]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

99.245

100

0.992
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment